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Segmentation fault (core dumped) #4

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karimi81 opened this issue Sep 29, 2021 · 3 comments
Open

Segmentation fault (core dumped) #4

karimi81 opened this issue Sep 29, 2021 · 3 comments

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@karimi81
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Hi There,
I am trying to use mTR to find tandem repeats in a large genome assembly (2.6 Gb). However, I encountered with following error:
line 9: 195240 Segmentation fault (core dumped) ./mTR new_id.fasta
Is there any solution to improve the memory utilization of software or to use parallel computation through the command line. Was mTR a suitable choice for large genome? I would be appreciated if you could help me in this regard.
Thanks
@keko950
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keko950 commented Oct 12, 2021

Hello, did you find a solution for this?

@keko950
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keko950 commented Oct 12, 2021 •
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keko950@9cf211a

@davidlougheed
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davidlougheed commented Jan 21, 2022 •
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I get a segfault with at least one of the test sequences (3_10) as well. I can confirm that the solution above removed the segfault.

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@davidlougheed @keko950 @karimi81