document_package.yml

name: Document package 
on:
    pull_request:
      branches:
        - develop
jobs:
    run_test_vardict_filter:
        # The type of runner that the job will run on
        runs-on: ubuntu-latest
        strategy:
            matrix:
                python-version: ["3.9"]
        steps:
            - name: Checkout
              uses: actions/checkout@v3

            - name: Set up Python 
              uses: actions/setup-python@v3
              with:
                  python-version: ${{ matrix.python-version }}
            - name: Document CLI and write to folder
              run: |
                    make deps-install
                    poetry run typer postprocessing_variant_calls.main utils docs > docs/CLI.md
            - name: Commit Doc Changes
              run: |
                    git config --global user.name 'buehlere'
                    git config --global user.email 'buehlere77@gmail.com'
                    git checkout ${{ github.head_ref }}
                    git add ./docs
                    git commit -m "Updating the repository GitHub MD documentation in the docs folder"
                    git push origin ${{ github.head_ref }}