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build-code.yml
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name: Build msmbuilder2022 source code
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
build-code:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 5
matrix:
python-version: ["3.9","3.10","3.11"]
os:
- macOS-latest
- ubuntu-latest
- windows-latest
defaults:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
auto-activate-base: true
auto-update-conda: true
python-version: ${{ matrix.python-version }}
activate-environment: test
- name: Install required packages
run: |
conda config --add channels conda-forge
# conda install -yq conda-build jinja2 conda-verify
conda install -yq zlib
conda install h5py
python -m pip install --upgrade pip
# conda update conda-build
# - name: Conda build
# run: |
# conda build --quiet devtools/conda-recipe
- name: Pip install
run: |
python -m pip install .
- name: Test with pytest
run: |
# conda install -yq -c ${CONDA_PREFIX}/conda-bld/ msmbuilder2022
pip install pytest==8.0.2
conda install -yq numdifftools hmmlearn nose
mkdir ../../pkgs
cp -r msmbuilder/tests ../../pkgs
cd ../../pkgs
python tests/data_init.py
pytest tests/ -v