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Add OME-TIFF (actually OME-XML) normalization step before SPRM proper #81

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mruffalo opened this issue Aug 16, 2022 · 0 comments
Open

Add OME-TIFF (actually OME-XML) normalization step before SPRM proper #81

mruffalo opened this issue Aug 16, 2022 · 0 comments
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New versions of the tifffile and aicsimagio libraries have trouble reading some OME-TIFF images, including the outputs of our CODEX pipeline and 3D IMC datasets.

Add a pipeline step before SPRM that uses bfconvert to normalize the OME-XML metadata.
@mruffalo mruffalo self-assigned this Aug 16, 2022
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