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test-workflow.yml
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# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: NF Workflow Testing
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
nextflow-test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
#- name: Set up Python 3.9
# uses: actions/setup-python@v2
# with:
# python-version: 3.9
- name: Install dependencies
run: |
#python -m pip install --upgrade pip
#pip install flake8 pytest
#if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Download Data
run: |
cd tests && sh ./get_data.sh && cd ..
- name: Workflow Testing
run: |
cd workflow
make run_test
make run_test_no_extract