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Defacing a MRI and CT scan should ideally be automatic and part of the workflow to enable sharing of the results of the data trivially via OpenNeuro.
Add pydeface pydeface to the installation python dependencies and also the Docker recipe.
pydeface
Implement rule deface_scans: in prep.smk file.
rule deface_scans:
prep.smk
Defacing can always occur via fiducials and mne_bids.write_anat, but pydeface seems like a way simpler solution.
mne_bids.write_anat
Thanks Greydon Gilmore for bringing it up.
The text was updated successfully, but these errors were encountered:
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Describe the problem
Defacing a MRI and CT scan should ideally be automatic and part of the workflow to enable sharing of the results of the data trivially via OpenNeuro.
Describe your solution
Add
pydeface
pydeface to the installation python dependencies and also the Docker recipe.Implement
rule deface_scans:
inprep.smk
file.Describe possible alternatives
Defacing can always occur via fiducials and
mne_bids.write_anat
, but pydeface seems like a way simpler solution.Additional context
Thanks Greydon Gilmore for bringing it up.
The text was updated successfully, but these errors were encountered: