Matlab path?

[GPana]

Sorry for this, but I am not a coder! This is a bit awkward..

How do I add the folder code in the Matlab path?

How do I run the script AxonSeg?

Kind Regards,

George

[alexfoias]

Hi @GPana ,

1. Download the latest release (3.4) of Axon Segmentation Toolbox : https://github.com/neuropoly/axonseg/releases
2. Unzip the axonseg-3.4 archive file
3. In the MATLAB - Command Window execute:
   folder = 'PATH_TO_UNZIPPED_axonseg-3.4'
   where PATH_TO_UNZIPPED_axonseg-3.4 is the path of the unzipped axonseg-3.4 archive
4. In the MATLAB - Command Window execute:
   addpath(genpath(folder));
   This command will add the scripts and subfolders to the MATLAB Environment
5. Run AxonSeg. In the matlab command window execute:
   AxonSeg

You can consult our tutorial script under /as_tutorial.m

[mathieuboudreau]

Hi @GPana - I'd also like to chime in to say that this project isn't being actively used anymore, I'd recommend you check out our more up-to-date AxonDeepSeg project here for a more automated approach at axon/myelin segmentation.