diff --git a/CHANGELOG.md b/CHANGELOG.md index ae01ba1f..53df95e7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,7 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Added` - [#700](https://github.com/nf-core/ampliseq/pull/700) - Optional `--save_intermediates` to publish QIIME2 data objects (.qza) and visualisation objects (.qzv) -- [#702](https://github.com/nf-core/ampliseq/pull/702),[#723](https://github.com/nf-core/ampliseq/pull/723),[#728](https://github.com/nf-core/ampliseq/pull/728) - Add multiple regions analysis (including 5R / SMURF / q2-sidle) +- [#702](https://github.com/nf-core/ampliseq/pull/702),[#723](https://github.com/nf-core/ampliseq/pull/723),[#728](https://github.com/nf-core/ampliseq/pull/728),[#729](https://github.com/nf-core/ampliseq/pull/729) - Add multiple regions analysis (including 5R / SMURF / q2-sidle) ### `Changed` diff --git a/modules/local/sidle_align.nf b/modules/local/sidle_align.nf index 15a3467b..115ccb6d 100644 --- a/modules/local/sidle_align.nf +++ b/modules/local/sidle_align.nf @@ -2,7 +2,7 @@ process SIDLE_ALIGN { tag "$meta.region" label 'process_medium' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: tuple val(meta), path(kmers), path(seq) diff --git a/modules/local/sidle_dbextract.nf b/modules/local/sidle_dbextract.nf index 91f3635e..2cb15b80 100644 --- a/modules/local/sidle_dbextract.nf +++ b/modules/local/sidle_dbextract.nf @@ -3,7 +3,7 @@ process SIDLE_DBEXTRACT { tag "$meta.region,$meta.region_length" label 'process_medium' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: tuple val(meta), path(table), path(seq), path(db_seq), path(db_tax) diff --git a/modules/local/sidle_dbfilt.nf b/modules/local/sidle_dbfilt.nf index 60b4b30f..0c9163f8 100644 --- a/modules/local/sidle_dbfilt.nf +++ b/modules/local/sidle_dbfilt.nf @@ -1,7 +1,7 @@ process SIDLE_DBFILT { label 'process_low' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(seq) diff --git a/modules/local/sidle_dbrecon.nf b/modules/local/sidle_dbrecon.nf index 18a819b3..717267e3 100644 --- a/modules/local/sidle_dbrecon.nf +++ b/modules/local/sidle_dbrecon.nf @@ -1,7 +1,7 @@ process SIDLE_DBRECON { label 'process_medium' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: val(metaid) diff --git a/modules/local/sidle_filttax.nf b/modules/local/sidle_filttax.nf index 52804b8a..bfe18282 100644 --- a/modules/local/sidle_filttax.nf +++ b/modules/local/sidle_filttax.nf @@ -2,7 +2,7 @@ process SIDLE_FILTTAX { label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(table_tofilter) diff --git a/modules/local/sidle_in.nf b/modules/local/sidle_in.nf index 4eddef41..a17c5ca9 100644 --- a/modules/local/sidle_in.nf +++ b/modules/local/sidle_in.nf @@ -2,7 +2,7 @@ process SIDLE_IN { tag "$meta.region" label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: tuple val(meta), path(table), path(seq) diff --git a/modules/local/sidle_indb.nf b/modules/local/sidle_indb.nf index f91a21ac..e87a7930 100644 --- a/modules/local/sidle_indb.nf +++ b/modules/local/sidle_indb.nf @@ -1,7 +1,7 @@ process SIDLE_INDB { label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(seq) diff --git a/modules/local/sidle_indbaligned.nf b/modules/local/sidle_indbaligned.nf index 4029d697..fc7bd705 100644 --- a/modules/local/sidle_indbaligned.nf +++ b/modules/local/sidle_indbaligned.nf @@ -1,7 +1,7 @@ process SIDLE_INDBALIGNED { label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(seq) diff --git a/modules/local/sidle_seqrecon.nf b/modules/local/sidle_seqrecon.nf index 38fa742d..75f41039 100644 --- a/modules/local/sidle_seqrecon.nf +++ b/modules/local/sidle_seqrecon.nf @@ -2,7 +2,7 @@ process SIDLE_SEQRECON { label 'process_medium' label 'single_cpu' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(reconstruction_map) diff --git a/modules/local/sidle_tablerecon.nf b/modules/local/sidle_tablerecon.nf index fc6ba9ee..f1d13aeb 100644 --- a/modules/local/sidle_tablerecon.nf +++ b/modules/local/sidle_tablerecon.nf @@ -1,7 +1,7 @@ process SIDLE_TABLERECON { label 'process_medium' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: val(metaid) diff --git a/modules/local/sidle_taxrecon.nf b/modules/local/sidle_taxrecon.nf index 13269a0e..d1f79388 100644 --- a/modules/local/sidle_taxrecon.nf +++ b/modules/local/sidle_taxrecon.nf @@ -1,7 +1,7 @@ process SIDLE_TAXRECON { label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(reconstruction_map) diff --git a/modules/local/sidle_treerecon.nf b/modules/local/sidle_treerecon.nf index 91838e3e..0824e0e5 100644 --- a/modules/local/sidle_treerecon.nf +++ b/modules/local/sidle_treerecon.nf @@ -1,7 +1,7 @@ process SIDLE_TREERECON { label 'process_medium' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: path(reconstruction_fragments) diff --git a/modules/local/sidle_trim.nf b/modules/local/sidle_trim.nf index 4809425d..36e21c91 100644 --- a/modules/local/sidle_trim.nf +++ b/modules/local/sidle_trim.nf @@ -2,7 +2,7 @@ process SIDLE_TRIM { tag "$meta.region,$meta.region_length" label 'process_single' - container 'docker.io/d4straub/pipesidle:0.1.0-beta' + container 'nf-core/pipesidle:0.1.0-beta' input: tuple val(meta), path(table), path(seq)