tuos_stanage.config

// Sheffield Bioinformatics Core Configuration Profile - Stanage
// Base Institutional Configuration


// nf-core specific parameters displayed in header summary of each run

params {

    config_profile_description = 'Sheffield Bioinformatics Core - Stanage'
    config_profile_contact     = 'Sheffield Bioinformatics Core (bioinformatics-core@sheffield.ac.uk)'
    config_profile_url         = 'https://docs.hpc.shef.ac.uk/en/latest/stanage/index.html#stanage'
}


// hpc resource limits

params {

    max_cpus   = 64
    max_memory = 251.GB
    max_time   = 96.h
}


// hpc configuration

process {
    resourceLimits = [
        memory: 251.GB,
        cpus: 64,
        time: 96.h
    ]

    // scheduler

    executor = 'slurm'
}


// optional executor settings

executor {

    queueSize       = 50
    submitRateLimit = '1 sec'
}


// container engine

singularity {

    enabled    = true
    autoMounts = true
}