nf-core/coproid: Changelog

v.1.1.1

Fixed

Fix #37 with conda environment and docker container update

v1.1

Update mapped basepair count to be quicker and include it in report #14
Remove outdated scripts #14
Update logo to match font #13
Update Sourcepredict to version 0.4 and reflect new parameters in coproID #19 e4afca7 c2d4164
Changed bedtools bamtofastq to samtools fastq e4afca7
Fixed column names in report (PC* to DIM*) e4afca7
Update README to inlude Zenodo badge, Quick start, contributor section, and tools references. 9874ae8 e85988b
Update documentation bedfdde
Update Nextflow minimum version to 19.04.0 44999fd
Update travis for more recent nextflow requirements 1e3e454
Adapt coproID to nf-core tools 1.8 release #21
Add social preview image #22
Fix Kraken2 segmentation error #26
Update to nf-core tools 1.9 release, and doc for new version of sphinx #27

v1.0 - 2019-04-26

Initial release of nf-core/coproid, created with the nf-core template. Adapting CoproID to nf-core template

Improvements over coproID version 0.6

Support for 3 organism comparison
Adding sourcepredict
Updating reports to have interactive plotting
Updated to use Kraken2 instead of Kraken1
Adding docker

Adaptions to port to nf-core

Major redefinition of the channels creation to adapt to iGenomes and profiles
Added and adapted all the nf-core boilerplate code for support of configs and containers
Improved documentation