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test command wrong in usage.md #501

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fbnrst opened this issue Dec 23, 2024 · 1 comment · Fixed by #502
Closed

test command wrong in usage.md #501

fbnrst opened this issue Dec 23, 2024 · 1 comment · Fixed by #502
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@fbnrst
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fbnrst commented Dec 23, 2024

I noticed that the test command in usage.md is wrong.
There is a --input samplesheet.csv that should not be there:

methylseq/docs/usage.md

Lines 178 to 182 in 4415e90

nextflow run nf-core/methylseq \
--input samplesheet.csv \
--outdir <OUTDIR> \
--genome GRCh38 \
-profile test,<docker/singularity/podman/shifter/charliecloud/conda/institute>

I believe the correct command is:

nextflow run nf-core/methylseq \
  --outdir <OUTDIR> \
  --genome GRCh38 \
  -profile test,<docker/singularity/podman/shifter/charliecloud/conda/institute>
@sateeshperi
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yup good catch......plz open a PR to dev with the change. Thank you

@sateeshperi sateeshperi added this to the 3.1.0 milestone Dec 23, 2024
@sateeshperi sateeshperi linked a pull request Dec 23, 2024 that will close this issue
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