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pigz uncompress missing backslash #6877

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ljwharbers opened this issue Oct 28, 2024 · 0 comments · May be fixed by #6878
Open
2 tasks done

pigz uncompress missing backslash #6877

ljwharbers opened this issue Oct 28, 2024 · 0 comments · May be fixed by #6878
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@ljwharbers
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Have you checked the docs?

Description of the bug

Missing backslash in the stub of pigz/uncompress module results in the following error/warning:
unknown recognition error type: groovyjarjarantlr4.v4.runtime.LexerNoViableAltException

Current:

    stub:
    def args = task.ext.args ?: ''
    uncompressed_filename = zip.toString() - '.gz'
    """
    touch ${zip.dropRight(3)}

    cat <<-END_VERSIONS > versions.yml
    "${task.process}":
        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
    END_VERSIONS
    """

Should be:

    stub:
    def args = task.ext.args ?: ''
    uncompressed_filename = zip.toString() - '.gz'
    """
    touch ${zip.dropRight(3)}

    cat <<-END_VERSIONS > versions.yml
    "${task.process}":
        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\\w*//' ))
    END_VERSIONS
    """

Command used and terminal output

No response

Relevant files

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System information

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@ljwharbers ljwharbers added the bug Something isn't working label Oct 28, 2024
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