From d1f0eecc57db9e79ab91ceef8421616984df181f Mon Sep 17 00:00:00 2001 From: subwaystation Date: Wed, 23 Aug 2023 10:08:08 +0200 Subject: [PATCH] also put DRAW into MultiQC report --- assets/multiqc_config.yml | 2 -- workflows/pangenome.nf | 2 +- 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index ea74319..bb584ca 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -52,8 +52,6 @@ sp: fn: "*viz_depth_multiqc.png" odgi_viz_uncalled: fn: "*viz_uncalled_multiqc.png" - testing_name: - fn: "*draw.png" ignore_images: false # Make the custom content stuff come after the ODGI module output diff --git a/workflows/pangenome.nf b/workflows/pangenome.nf index 2d61542..df87b3c 100644 --- a/workflows/pangenome.nf +++ b/workflows/pangenome.nf @@ -159,7 +159,7 @@ workflow PANGENOME { ch_multiqc_files = ch_multiqc_files.mix(CUSTOM_DUMPSOFTWAREVERSIONS.out.mqc_yml.collect()) if (!params.communities) { if (!params.wfmash_only) { - ch_multiqc_files = ch_multiqc_files.mix(PGGB.out.qc.map{return it[1..8]}) + ch_multiqc_files = ch_multiqc_files.mix(PGGB.out.qc.map{return it[1..9]}) } } else { ch_multiqc_files = ch_multiqc_files.mix(ODGI_QC.out.qc.map{return it[1..8]})