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Add samtools mpileup as an alternative variant caller #110

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Leon-Bichmann opened this issue Nov 28, 2023 · 0 comments
Open

Add samtools mpileup as an alternative variant caller #110

Leon-Bichmann opened this issue Nov 28, 2023 · 0 comments
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enhancement Improvement for existing functionality

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@Leon-Bichmann
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Description of feature

I tried using the default variants called using GATK but they didn't seem to work as well for my purpose. On the contrary samtools mpileup worked extremely well.

Maybe it would be worthwhile adding it as an alternative calling procedure to this?
@Leon-Bichmann Leon-Bichmann added the enhancement Improvement for existing functionality label Nov 28, 2023
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@Leon-Bichmann