diff --git a/docs/images/sarek_subway.png b/docs/images/sarek_subway.png index 9af0154f1a..af1d6f11fc 100644 Binary files a/docs/images/sarek_subway.png and b/docs/images/sarek_subway.png differ diff --git a/subworkflows/nf-core/bam_to_cram.nf b/subworkflows/nf-core/bam_to_cram.nf index 2b00c16000..fc3c5a54d4 100644 --- a/subworkflows/nf-core/bam_to_cram.nf +++ b/subworkflows/nf-core/bam_to_cram.nf @@ -6,7 +6,7 @@ include { SAMTOOLS_CONVERT as SAMTOOLS_BAMTOCRAM } from '../../modules/nf-core/modules/samtools/convert/main' include { SAMTOOLS_STATS as SAMTOOLS_STATS_CRAM } from '../../modules/nf-core/modules/samtools/stats/main' -include { MOSDEPTH } from '../../modules/nf-core/modules/mosdepth/main' +include { MOSDEPTH } from '../../modules/nf-core/modules/mosdepth/main' workflow BAM_TO_CRAM { take: diff --git a/subworkflows/nf-core/cram_qc.nf b/subworkflows/nf-core/cram_qc.nf index b28a040781..295ee9abfe 100644 --- a/subworkflows/nf-core/cram_qc.nf +++ b/subworkflows/nf-core/cram_qc.nf @@ -5,7 +5,7 @@ // A when clause condition is defined in the conf/modules.config to determine if the module should be run include { SAMTOOLS_STATS } from '../../modules/nf-core/modules/samtools/stats/main' -include { MOSDEPTH } from '../../modules/nf-core/modules/mosdepth/main' +include { MOSDEPTH } from '../../modules/nf-core/modules/mosdepth/main' workflow CRAM_QC { take: