diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 0802e2b..6972735 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,20 +21,6 @@ concurrency: cancel-in-progress: true jobs: - define_nxf_versions: - name: Choose nextflow versions to test against depending on target branch - runs-on: ubuntu-latest - outputs: - matrix: ${{ steps.nxf_versions.outputs.matrix }} - steps: - - id: nxf_versions - run: | - if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "dev" && "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then - echo matrix='["latest-everything"]' | tee -a $GITHUB_OUTPUT - else - echo matrix='["latest-everything", "23.04.0"]' | tee -a $GITHUB_OUTPUT - fi - test: name: Run pipeline with test data # Only run on push if this is the nf-core dev branch (merged PRs) @@ -43,7 +29,9 @@ jobs: strategy: fail-fast: false matrix: - NXF_VER: ${{ fromJson(needs.define_nxf_versions.outputs.matrix) }} + NXF_VER: + - "23.04.0" + - "latest-everything" test: - tests/pipeline/test_spaceranger_ffpe_v1.nf.test - tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test