From e77ed1b254bfacd063a5334d8ca47bdd18466a88 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Thu, 25 Apr 2024 20:30:35 +0000 Subject: [PATCH 1/2] Update pre-commit hook astral-sh/ruff-pre-commit to v0.4.2 --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5ff5afd864..d8f35e2cc5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.4.1 + rev: v0.4.2 hooks: - id: ruff # linter args: [--fix, --exit-non-zero-on-fix] # sort imports and fix From 2d029dbb86ed9098881991df0f0264c8a75aed0c Mon Sep 17 00:00:00 2001 From: mashehu Date: Fri, 26 Apr 2024 14:13:44 +0200 Subject: [PATCH 2/2] fix ruff linting (UP031) --- nf_core/download.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/download.py b/nf_core/download.py index 9d4decc424..8ffecc0f55 100644 --- a/nf_core/download.py +++ b/nf_core/download.py @@ -925,7 +925,7 @@ def rectify_raw_container_matches(self, raw_findings): if bool(container_definition) and bool(container_definition.group(1)): pattern = re.escape(container_definition.group(1)) # extract the quoted string(s) following the variable assignment - container_names = re.findall(r"%s\s*=\s*[\"\']([^\"\']+)[\"\']" % pattern, search_space) + container_names = re.findall(rf"{pattern}\s*=\s*[\"\']([^\"\']+)[\"\']", search_space) if bool(container_names): if isinstance(container_names, str):