From 78cd9d9643ba981d91f9bbc8255bec05e78ba129 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Fri, 28 Feb 2025 10:27:03 +0100 Subject: [PATCH] Apply suggestions from code review MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Júlia Mir Pedrol --- nf_core/pipeline-template/tests/.nftignore | 4 ++-- nf_core/pipeline-template/tests/default.nf.test | 2 +- nf_core/pipeline-template/tests/nextflow.config | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/nf_core/pipeline-template/tests/.nftignore b/nf_core/pipeline-template/tests/.nftignore index b9452667c..4dc186e37 100644 --- a/nf_core/pipeline-template/tests/.nftignore +++ b/nf_core/pipeline-template/tests/.nftignore @@ -1,6 +1,6 @@ .DS_Store -{% if multiqc %} +{%- if multiqc %} multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png} multiqc/multiqc_report.html -{% end if %} +{%- endif %} pipeline_info/*.{html,json,txt,yml} diff --git a/nf_core/pipeline-template/tests/default.nf.test b/nf_core/pipeline-template/tests/default.nf.test index 54baaa71a..d0fe324a3 100644 --- a/nf_core/pipeline-template/tests/default.nf.test +++ b/nf_core/pipeline-template/tests/default.nf.test @@ -22,7 +22,7 @@ nextflow_pipeline { { assert snapshot( // Number of successful tasks workflow.trace.succeeded().size(), - // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions + // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions removeNextflowVersion("$outputDir/pipeline_info/nf_core_{{ short_name }}_software_mqc_versions.yml"), // All stable path name, with a relative path stable_name, diff --git a/nf_core/pipeline-template/tests/nextflow.config b/nf_core/pipeline-template/tests/nextflow.config index 02c49d5b4..17e9fd4ea 100644 --- a/nf_core/pipeline-template/tests/nextflow.config +++ b/nf_core/pipeline-template/tests/nextflow.config @@ -4,5 +4,5 @@ ======================================================================================== */ -// Specify any additional parameters here +// TODO nf-core: Specify any additional parameters here // Or any resources requirements