diff --git a/modules.json b/modules.json index bde8cd71..f2405bfc 100644 --- a/modules.json +++ b/modules.json @@ -82,7 +82,7 @@ "git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d" }, "nextclade": { - "git_sha": "e937c7950af70930d1f34bb961403d9d2aa81c7d" + "git_sha": "29c847424034eb04765d7378fb384ad3094a66a6" }, "pangolin": { "git_sha": "e7e30b6da631ce5288151af4e46488ac6d294ff4" diff --git a/modules/nf-core/modules/nextclade/meta.yml b/modules/nf-core/modules/nextclade/meta.yml index 8e0eabd7..d321e08f 100644 --- a/modules/nf-core/modules/nextclade/meta.yml +++ b/modules/nf-core/modules/nextclade/meta.yml @@ -11,7 +11,7 @@ tools: documentation: None tool_dev_url: https://github.com/nextstrain/nextclade doi: "" - licence: ['MIT'] + licence: ["MIT"] input: - meta: @@ -23,11 +23,6 @@ input: type: file description: FASTA file containing one or more consensus sequences pattern: "*.{fasta,fa}" - - output_format: - type: string - description: | - String for output format supported by nextclade - i.e one of 'json', 'csv', 'tsv', 'tree', 'tsv-clades-only' output: - meta: