Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

AttributeError: 'NoneType' object has no attribute 'start' #10

Open
crosenth opened this issue Dec 10, 2020 · 1 comment
Open

AttributeError: 'NoneType' object has no attribute 'start' #10

crosenth opened this issue Dec 10, 2020 · 1 comment

Comments

@crosenth
Copy link

av --consensus --reference-top --simchar . --trim-to "1" input.afa

  File "av", line 11, in <module>
    load_entry_point('alnvu==0.3.3', 'console_scripts', 'av')()
  File "lib/python3.6/site-packages/alnvu/av.py", line 263, in main
    reference_top=args.reference_top)
  File "lib/python3.6/site-packages/alnvu/util.py", line 153, in reformat
    start, stop = get_extent(get_seq_from_list(trim_to, seqlist).seq)
  File "lib/python3.6/site-packages/alnvu/util.py", line 69, in get_extent
    start = re.search(r'[a-z]', seqstr, flags=re.I).start()
AttributeError: 'NoneType' object has no attribute 'start'

input.txt

@crosenth
Copy link
Author

crosenth commented Dec 16, 2020

PR #11

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant