Exception raised while executing Node _UploadMetric

[DVSneuro]

What happened?

MRIQC crashed while attempting to upload metrics. Internet connectivity should not be an issue on this computer, and it looks like a variable intended to be a str was coded as something else?

What command did you use?

TEMPLATEFLOW_DIR=/ZPOOL/data/tools/templateflow
export APPTAINERENV_TEMPLATEFLOW_HOME=/opt/templateflow
singularity run --cleanenv \
-B ${TEMPLATEFLOW_DIR}:/opt/templateflow \
-B $maindir:/base \
-B $scratchdir:/scratch \
/ZPOOL/data/tools/mriqc-24.0.2.simg \
/base/bids /base/derivatives/mriqc \
participant --participant_label $sub \
-w /scratch

What version of the software are you running?

24.0.2

How are you running this software?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

Node: _UploadMetrics1
Working directory: /scratch/mriqc_wf/funcMRIQC/5f1d50ce95794c9e867ecec5e22ed18a7961e99c/UploadMetrics/mapflow/_UploadMetrics1

Node inputs:

auth_token = 8sSYVI0XjFqacEMZ8wF4
email = <undefined>
endpoint = https://mriqc.nimh.nih.gov:443/api/v1
in_iqms = /base/derivatives/mriqc/sub-10803sp/func/sub-10803sp_task-sharedreward_acq-mb3me3ip0_echo-2_part-mag_bold.json
modality = undefined
strict = False

Traceback (most recent call last):
  File "/opt/conda/lib/python3.11/site-packages/mriqc/engine/plugin.py", line 64, in run_node
    result['result'] = node.run(updatehash=updatehash)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node _UploadMetrics1.

Traceback:
	Traceback (most recent call last):
	  File "/opt/conda/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
	    runtime = self._run_interface(runtime)
	              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
	  File "/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/webapi.py", line 186, in _run_interface
	    errmsg = '\n'.join(
	             ^^^^^^^^^^
	TypeError: sequence item 6: expected str instance, bytes found

Additional information / screenshots

Data are available on OpenNeuro: https://openneuro.org/datasets/ds005085/versions/1.0.0

[sparimoo95]

I am getting the same error, were you able to figure out a solution?

[DVSneuro]

I ended up adding --notrack --no-sub to prevent any uploads. With those flags in place, it will run.

[sparimoo95]

thank you!

[Metasoliton]

I encountered the same problem with version 24.0.2 and solved it the same way ( thanks @DVSneuro ! )

A suggestion for the developers: The whole processing should not crash if the upload/submission fails as that can be quite frustrating, both in terms or repeating the computationally expensive processing as well as in terms of the time consuming debugging.

A warning/notification could be printed instead (possibly requesting a manual upload if those logs are super important for you ; )