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  • variables (list of str) – List of variables for which exponential terms should be computed.

    • -

  • data (DataFrame) – Table of values of all observations of all variables.

    • +

  • data (DataFrame) – Table of values of all observations of all variables.

    • Returns:

    @@ -424,13 +424,13 @@
    Returns:

    @@ -474,7 +474,7 @@

    Temporal derivatives and exponential terms are computed for all terms in the grouping symbols that they adjoin.

    -

  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive +

  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive term in model_formula should correspond either to a variable in this data frame or to instructions for operating on a variable (for instance, computing temporal derivatives or exponential terms).

    • @@ -484,7 +484,7 @@

    @@ -498,7 +498,7 @@
    Parameters:

    References

    @@ -551,14 +551,14 @@ To retain the original terms, 0 must be included in the list.

  • variables (list of str) – List of variables for which temporal derivative terms should be computed.

    • -

  • data (DataFrame) – Table of values of all observations of all variables.

    • +

  • data (DataFrame) – Table of values of all observations of all variables.

    • Returns:

    diff --git a/master/api/niworkflows.utils.spaces.html b/master/api/niworkflows.utils.spaces.html index 0c16eca506e..c55ab8a69a4 100644 --- a/master/api/niworkflows.utils.spaces.html +++ b/master/api/niworkflows.utils.spaces.html @@ -807,7 +807,7 @@
    -standard_spaces = ('Fischer344', 'MNI152Lin', 'MNI152NLin2009aAsym', 'MNI152NLin2009aSym', 'MNI152NLin2009bAsym', 'MNI152NLin2009bSym', 'MNI152NLin2009cAsym', 'MNI152NLin2009cSym', 'MNI152NLin6Asym', 'MNI152NLin6Sym', 'MNI305', 'MNIColin27', 'MNIInfant', 'MNIPediatricAsym', 'MouseIn', 'NKI', 'NMT31Sym', 'OASIS30ANTs', 'PNC', 'RESILIENT', 'UNCInfant', 'VALiDATe29', 'WHS', 'fsLR', 'fsaverage', 'onavg')#
    +standard_spaces = ('Fischer344', 'MNI152Lin', 'MNI152NLin2009aAsym', 'MNI152NLin2009aSym', 'MNI152NLin2009bAsym', 'MNI152NLin2009bSym', 'MNI152NLin2009cAsym', 'MNI152NLin2009cSym', 'MNI152NLin6Asym', 'MNI152NLin6Sym', 'MNI305', 'MNIColin27', 'MNIInfant', 'MNIPediatricAsym', 'MouseIn', 'NKI', 'NMT31Sym', 'OASIS30ANTs', 'PNC', 'RESILIENT', 'UNCInfant', 'VALiDATe29', 'WHS', 'dhcpAsym', 'dhcpSym', 'dhcpVol', 'fsLR', 'fsaverage', 'onavg')#

    List of supported standard reference spaces.

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niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.DerivativesDataSink"]], "readsidecarjson (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON"]], "layout (niworkflows.interfaces.bids.readsidecarjson attribute)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON.layout"]], "niworkflows.interfaces.bids": [[16, "module-niworkflows.interfaces.bids"]], "out_path_base (niworkflows.interfaces.bids.derivativesdatasink attribute)": [[16, "niworkflows.interfaces.bids.DerivativesDataSink.out_path_base"]], "output_spec (niworkflows.interfaces.bids.bidsinfo attribute)": [[16, "niworkflows.interfaces.bids.BIDSInfo.output_spec"]], "output_spec (niworkflows.interfaces.bids.readsidecarjson attribute)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON.output_spec"]], "nonsteadystatesdetector (class in niworkflows.interfaces.bold)": [[17, "niworkflows.interfaces.bold.NonsteadyStatesDetector"]], "niworkflows.interfaces.bold": [[17, "module-niworkflows.interfaces.bold"]], "ciftinamesource (class in niworkflows.interfaces.cifti)": [[18, "niworkflows.interfaces.cifti.CiftiNameSource"]], "generatecifti (class in niworkflows.interfaces.cifti)": [[18, "niworkflows.interfaces.cifti.GenerateCifti"]], "niworkflows.interfaces.cifti": [[18, "module-niworkflows.interfaces.cifti"]], "expandmodel (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.ExpandModel"]], "normalizemotionparams (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.NormalizeMotionParams"]], "spikeregressors (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.SpikeRegressors"]], "exponential_terms() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.exponential_terms"]], "niworkflows.interfaces.confounds": [[19, "module-niworkflows.interfaces.confounds"]], "parse_expression() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.parse_expression"]], "parse_formula() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.parse_formula"]], "spike_regressors() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.spike_regressors"]], "temporal_derivatives() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.temporal_derivatives"]], "data_dir() (in module niworkflows.interfaces.conftest)": [[20, "niworkflows.interfaces.conftest.data_dir"]], "niworkflows.interfaces.conftest": [[20, "module-niworkflows.interfaces.conftest"]], "fixheaderapplytransforms (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixHeaderApplyTransforms"]], "fixheaderregistration (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixHeaderRegistration"]], "fixn4biasfieldcorrection (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"]], "niworkflows.interfaces.fixes": [[21, "module-niworkflows.interfaces.fixes"]], "fsdetectinputs (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.FSDetectInputs"]], "fsinjectbrainextracted (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.FSInjectBrainExtracted"]], "makemidthickness (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.MakeMidthickness"]], "medialnans (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.MedialNaNs"]], "patchedbbregisterrpt (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"]], "patchedconcatenatelta (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"]], "patchedltaconvert (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedLTAConvert"]], "patchedmricoregrpt (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"]], "patchedrobustregister (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedRobustRegister"]], "refinebrainmask (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.RefineBrainMask"]], "structuralreference (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.StructuralReference"]], "truncatelta (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.TruncateLTA"]], "cmdline (niworkflows.interfaces.freesurfer.makemidthickness property)": [[22, "niworkflows.interfaces.freesurfer.MakeMidthickness.cmdline"]], "cmdline (niworkflows.interfaces.freesurfer.structuralreference property)": [[22, "niworkflows.interfaces.freesurfer.StructuralReference.cmdline"]], "detect_inputs() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.detect_inputs"]], "fix_lta_length() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.fix_lta_length"]], "grow_mask() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.grow_mask"]], "inject_skullstripped() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.inject_skullstripped"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedconcatenatelta attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedConcatenateLTA.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedltaconvert attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedLTAConvert.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedrobustregister attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedRobustRegister.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.truncatelta attribute)": [[22, "niworkflows.interfaces.freesurfer.TruncateLTA.lta_outputs"]], "medial_wall_to_nan() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.medial_wall_to_nan"]], "mri_info() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.mri_info"]], "niworkflows.interfaces.freesurfer": [[22, "module-niworkflows.interfaces.freesurfer"]], "refine_aseg() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.refine_aseg"]], "copyheader (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.CopyHeader"]], "copyxform (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.CopyXForm"]], "matchheader (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.MatchHeader"]], "sanitizeimage (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.SanitizeImage"]], "validateimage (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.ValidateImage"]], "niworkflows.interfaces.header": [[23, "module-niworkflows.interfaces.header"]], "output_spec (niworkflows.interfaces.header.copyxform attribute)": [[23, "niworkflows.interfaces.header.CopyXForm.output_spec"]], "conform (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.Conform"]], "intramodalmerge (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.IntraModalMerge"]], "regridtozooms (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.RegridToZooms"]], "robustaverage (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.RobustAverage"]], "signalextraction (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.SignalExtraction"]], "templatedimensions (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.TemplateDimensions"]], "niworkflows.interfaces.images": [[24, "module-niworkflows.interfaces.images"]], "normalize_xform() (in module niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.normalize_xform"]], "reorient() (in module niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.reorient"]], "mcflirt2itk (class in niworkflows.interfaces.itk)": [[25, "niworkflows.interfaces.itk.MCFLIRT2ITK"]], "multiapplytransforms (class in niworkflows.interfaces.itk)": [[25, "niworkflows.interfaces.itk.MultiApplyTransforms"]], "niworkflows.interfaces.itk": [[25, "module-niworkflows.interfaces.itk"]], "binarydilation (class in niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.BinaryDilation"]], "binarysubtraction (class in niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.BinarySubtraction"]], "image_binary_dilation() (in module niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.image_binary_dilation"]], "niworkflows.interfaces.morphology": [[26, "module-niworkflows.interfaces.morphology"]], "applymask (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.ApplyMask"]], "binarize (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.Binarize"]], "binarydilation (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.BinaryDilation"]], "demeanimage (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.DemeanImage"]], "filledimagelike (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.FilledImageLike"]], "generatesamplingreference (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.GenerateSamplingReference"]], "intensityclip (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.IntensityClip"]], "maplabels (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MapLabels"]], "mergerois (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MergeROIs"]], "mergeseries (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MergeSeries"]], "regridtozooms (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.RegridToZooms"]], "reorientimage (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.ReorientImage"]], "splitseries (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.SplitSeries"]], "niworkflows.interfaces.nibabel": [[27, "module-niworkflows.interfaces.nibabel"]], "reorient_file() (in module niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.reorient_file"]], "reorient_image() (in module niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.reorient_image"]], "computeepimask (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.ComputeEPIMask"]], "maskepi (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.MaskEPI"]], "merge (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.Merge"]], "niworkflows.interfaces.nilearn": [[28, "module-niworkflows.interfaces.nilearn"]], "concatenatexfms (class in niworkflows.interfaces.nitransforms)": [[29, "niworkflows.interfaces.nitransforms.ConcatenateXFMs"]], "concatenate_xfms() (in module niworkflows.interfaces.nitransforms)": [[29, "niworkflows.interfaces.nitransforms.concatenate_xfms"]], "niworkflows.interfaces.nitransforms": [[29, "module-niworkflows.interfaces.nitransforms"]], "spatialnormalization (class in niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.SpatialNormalization"]], "create_cfm() (in module niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.create_cfm"]], "mask() (in module niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.mask"]], "niworkflows.interfaces.norm": [[30, "module-niworkflows.interfaces.norm"]], "robustacompcor (class in niworkflows.interfaces.patches)": [[31, "niworkflows.interfaces.patches.RobustACompCor"]], "robusttcompcor (class in niworkflows.interfaces.patches)": [[31, "niworkflows.interfaces.patches.RobustTCompCor"]], "niworkflows.interfaces.patches": [[31, "module-niworkflows.interfaces.patches"]], "compcorvarianceplot (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.CompCorVariancePlot"]], "confoundscorrelationplot (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.ConfoundsCorrelationPlot"]], "fmrisummary (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.FMRISummary"]], "niworkflows.interfaces.plotting": [[32, "module-niworkflows.interfaces.plotting"]], "addtpms (class in niworkflows.interfaces.probmaps)": [[33, "niworkflows.interfaces.probmaps.AddTPMs"]], "tpm2roi (class in niworkflows.interfaces.probmaps)": [[33, "niworkflows.interfaces.probmaps.TPM2ROI"]], "niworkflows.interfaces.probmaps": [[33, "module-niworkflows.interfaces.probmaps"]], "niworkflows.interfaces.reportlets": [[34, "module-niworkflows.interfaces.reportlets"]], "registrationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.RegistrationRC"]], "reportinginterface (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.ReportingInterface"]], "segmentationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.SegmentationRC"]], "surfacesegmentationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.SurfaceSegmentationRC"]], "niworkflows.interfaces.reportlets.base": [[35, "module-niworkflows.interfaces.reportlets.base"]], "acompcorrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.ACompCorRPT"]], "betrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.BETRPT"]], "brainextractionrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.BrainExtractionRPT"]], "roisplot (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.ROIsPlot"]], "simpleshowmaskrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.SimpleShowMaskRPT"]], "tcompcorrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.TCompCorRPT"]], "niworkflows.interfaces.reportlets.masks": [[36, "module-niworkflows.interfaces.reportlets.masks"]], "antsapplytransformsrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ANTSApplyTransformsRPT"]], "antsregistrationrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ANTSRegistrationRPT"]], "applytopuprpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ApplyTOPUPRPT"]], "applyxfmrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ApplyXFMRPT"]], "bbregisterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.BBRegisterRPT"]], "flirtrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.FLIRTRPT"]], "fuguerpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.FUGUERPT"]], "mricoregrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.MRICoregRPT"]], "resamplebeforeafterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ResampleBeforeAfterRPT"]], "simplebeforeafterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.SimpleBeforeAfterRPT"]], "spatialnormalizationrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT"]], "niworkflows.interfaces.reportlets.registration": [[37, "module-niworkflows.interfaces.reportlets.registration"]], "fastrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.FASTRPT"]], "ica_aromarpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.ICA_AROMARPT"]], "melodicrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.MELODICRPT"]], "reconallrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.ReconAllRPT"]], "niworkflows.interfaces.reportlets.segmentation": [[38, "module-niworkflows.interfaces.reportlets.segmentation"]], "spacedatasource (class in niworkflows.interfaces.space)": [[39, "niworkflows.interfaces.space.SpaceDataSource"]], "niworkflows.interfaces.space": [[39, "module-niworkflows.interfaces.space"]], "csvtogifti (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.CSVToGifti"]], "createsurfaceroi (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.CreateSurfaceROI"]], "giftinamesource (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiNameSource"]], "giftisetanatomicalstructure (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiSetAnatomicalStructure"]], "giftitocsv (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiToCSV"]], "normalizesurf (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.NormalizeSurf"]], "plytogifti (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.PLYtoGifti"]], "path2bids (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.Path2BIDS"]], "poissonrecon (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.PoissonRecon"]], "surfacestopointcloud (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.SurfacesToPointCloud"]], "unzipjoinedsurfaces (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.UnzipJoinedSurfaces"]], "get_gii_meta() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.get_gii_meta"]], "load_transform() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.load_transform"]], "niworkflows.interfaces.surf": [[40, "module-niworkflows.interfaces.surf"]], "normalize_surfs() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.normalize_surfs"]], "output_spec (niworkflows.interfaces.surf.path2bids attribute)": [[40, "niworkflows.interfaces.surf.Path2BIDS.output_spec"]], "ply2gii() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.ply2gii"]], "pointcloud2ply() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.pointcloud2ply"]], "vertex_normals() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.vertex_normals"]], "addtsvheader (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.AddTSVHeader"]], "dictmerge (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.DictMerge"]], "jointsvcolumns (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.JoinTSVColumns"]], "keyselect (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.KeySelect"]], "tsv2json (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.TSV2JSON"]], "input_spec (niworkflows.interfaces.utility.keyselect attribute)": [[41, "niworkflows.interfaces.utility.KeySelect.input_spec"]], "niworkflows.interfaces.utility": [[41, "module-niworkflows.interfaces.utility"]], "output_spec (niworkflows.interfaces.utility.keyselect attribute)": [[41, "niworkflows.interfaces.utility.KeySelect.output_spec"]], "metricdilate (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricDilate"]], "metricfillholes (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricFillHoles"]], "metricmask (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricMask"]], "metricremoveislands (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricRemoveIslands"]], "metricresample (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricResample"]], "openmpcommandmixin (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.OpenMPCommandMixin"]], "volumetosurfacemapping (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.VolumeToSurfaceMapping"]], "niworkflows.interfaces.workbench": [[42, "module-niworkflows.interfaces.workbench"]], "run() (niworkflows.interfaces.workbench.openmpcommandmixin method)": [[42, "niworkflows.interfaces.workbench.OpenMPCommandMixin.run"]], "generate_reports() (in module niworkflows.reports)": [[43, "niworkflows.reports.generate_reports"]], "niworkflows.reports": [[43, "module-niworkflows.reports"]], "element (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Element"]], "report (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Report"]], "reportlet (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Reportlet"]], "smallest (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Smallest"]], "subreport (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.SubReport"]], "generate_report() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.generate_report"]], "generate_reports() (in module niworkflows.reports.core)": [[44, "niworkflows.reports.core.generate_reports"]], "index() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.index"]], "init_layout() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.init_layout"]], "is_empty() (niworkflows.reports.core.reportlet method)": [[44, 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"id50"]], "0.0.3": [[61, "id51"]], "0.0.2": [[61, "id52"]], "0.0.1": [[61, "id53"]], "NeuroImaging workflows (NiWorkflows): robust processing tools for MRI data": [[62, "neuroimaging-workflows-niworkflows-robust-processing-tools-for-mri-data"]], "Contents": [[62, "contents"]], "Installation": [[63, "id1"]], "External Dependencies": [[63, "external-dependencies"]]}, "indexentries": {"module": [[1, "module-niworkflows.anat"], [2, "module-niworkflows.anat.ants"], [3, "module-niworkflows.anat.coregistration"], [4, "module-niworkflows.anat.freesurfer"], [5, "module-niworkflows.anat.skullstrip"], [6, "module-niworkflows.cli"], [7, "module-niworkflows.cli.boldref"], [8, "module-niworkflows.data"], [9, "module-niworkflows.dwi"], [10, "module-niworkflows.engine"], [11, "module-niworkflows.engine.plugin"], [12, "module-niworkflows.engine.workflows"], [13, "module-niworkflows.func"], [14, "module-niworkflows.func.util"], [15, "module-niworkflows.interfaces"], [16, 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[37, "module-niworkflows.interfaces.reportlets.registration"], [38, "module-niworkflows.interfaces.reportlets.segmentation"], [39, "module-niworkflows.interfaces.space"], [40, "module-niworkflows.interfaces.surf"], [41, "module-niworkflows.interfaces.utility"], [42, "module-niworkflows.interfaces.workbench"], [43, "module-niworkflows.reports"], [44, "module-niworkflows.reports.core"], [45, "module-niworkflows.utils"], [46, "module-niworkflows.utils.bids"], [47, "module-niworkflows.utils.connections"], [48, "module-niworkflows.utils.debug"], [49, "module-niworkflows.utils.images"], [50, "module-niworkflows.utils.misc"], [51, "module-niworkflows.utils.spaces"], [52, "module-niworkflows.utils.testing"], [53, "module-niworkflows.utils.timeseries"], [54, "module-niworkflows.viz"], [55, "module-niworkflows.viz.notebook"], [56, "module-niworkflows.viz.plots"], [57, "module-niworkflows.viz.utils"], [58, "module-niworkflows.workflows"], [59, "module-niworkflows.workflows.epi"], [60, "module-niworkflows.workflows.epi.refmap"]], "niworkflows.anat": [[1, "module-niworkflows.anat"]], "init_atropos_wf() (in module niworkflows.anat.ants)": [[2, "niworkflows.anat.ants.init_atropos_wf"]], "init_brain_extraction_wf() (in module niworkflows.anat.ants)": [[2, "niworkflows.anat.ants.init_brain_extraction_wf"]], "init_n4_only_wf() (in module niworkflows.anat.ants)": [[2, "niworkflows.anat.ants.init_n4_only_wf"]], "niworkflows.anat.ants": [[2, "module-niworkflows.anat.ants"]], "compare_xforms() (in module niworkflows.anat.coregistration)": [[3, "niworkflows.anat.coregistration.compare_xforms"]], "init_bbreg_wf() (in module niworkflows.anat.coregistration)": [[3, "niworkflows.anat.coregistration.init_bbreg_wf"]], "niworkflows.anat.coregistration": [[3, "module-niworkflows.anat.coregistration"]], "init_gifti_surface_wf() (in module niworkflows.anat.freesurfer)": [[4, "niworkflows.anat.freesurfer.init_gifti_surface_wf"]], "niworkflows.anat.freesurfer": [[4, "module-niworkflows.anat.freesurfer"]], "afni_wf() (in module niworkflows.anat.skullstrip)": [[5, "niworkflows.anat.skullstrip.afni_wf"]], "niworkflows.anat.skullstrip": [[5, "module-niworkflows.anat.skullstrip"]], "niworkflows.cli": [[6, "module-niworkflows.cli"]], "get_parser() (in module niworkflows.cli.boldref)": [[7, "niworkflows.cli.boldref.get_parser"]], "main() (in module niworkflows.cli.boldref)": [[7, "niworkflows.cli.boldref.main"]], "niworkflows.cli.boldref": [[7, "module-niworkflows.cli.boldref"]], "loader (class in niworkflows.data)": [[8, "niworkflows.data.Loader"]], "as_path() (niworkflows.data.loader method)": [[8, "niworkflows.data.Loader.as_path"]], "as_path() (niworkflows.data.load method)": [[8, "niworkflows.data.load.as_path"]], "cached() (niworkflows.data.loader method)": [[8, "niworkflows.data.Loader.cached"]], "cached() (niworkflows.data.load method)": [[8, "niworkflows.data.load.cached"]], "load() (in module niworkflows.data)": [[8, "niworkflows.data.load"]], "niworkflows.data": [[8, "module-niworkflows.data"]], "readable() (niworkflows.data.loader method)": [[8, "niworkflows.data.Loader.readable"]], "readable() (niworkflows.data.load method)": [[8, "niworkflows.data.load.readable"]], "niworkflows.dwi": [[9, "module-niworkflows.dwi"]], "niworkflows.engine": [[10, "module-niworkflows.engine"]], "distributedpluginbase (class in niworkflows.engine.plugin)": [[11, "niworkflows.engine.plugin.DistributedPluginBase"]], "multiprocplugin (class in niworkflows.engine.plugin)": [[11, "niworkflows.engine.plugin.MultiProcPlugin"]], "pluginbase (class in niworkflows.engine.plugin)": [[11, "niworkflows.engine.plugin.PluginBase"]], "niworkflows.engine.plugin": [[11, "module-niworkflows.engine.plugin"]], "run() (niworkflows.engine.plugin.distributedpluginbase method)": [[11, "niworkflows.engine.plugin.DistributedPluginBase.run"]], "run() (niworkflows.engine.plugin.pluginbase method)": [[11, "niworkflows.engine.plugin.PluginBase.run"]], "run_node() (in module niworkflows.engine.plugin)": [[11, "niworkflows.engine.plugin.run_node"]], "literateworkflow (class in niworkflows.engine.workflows)": [[12, "niworkflows.engine.workflows.LiterateWorkflow"]], "niworkflows.engine.workflows": [[12, "module-niworkflows.engine.workflows"]], "visit_desc() (niworkflows.engine.workflows.literateworkflow method)": [[12, "niworkflows.engine.workflows.LiterateWorkflow.visit_desc"]], "niworkflows.func": [[13, "module-niworkflows.func"]], "init_bold_reference_wf() (in module niworkflows.func.util)": [[14, "niworkflows.func.util.init_bold_reference_wf"]], "init_enhance_and_skullstrip_bold_wf() (in module niworkflows.func.util)": [[14, "niworkflows.func.util.init_enhance_and_skullstrip_bold_wf"]], "init_skullstrip_bold_wf() (in module niworkflows.func.util)": [[14, "niworkflows.func.util.init_skullstrip_bold_wf"]], "niworkflows.func.util": [[14, "module-niworkflows.func.util"]], "niworkflows.interfaces": [[15, "module-niworkflows.interfaces"]], "bidsdatagrabber (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.BIDSDataGrabber"]], "bidsfreesurferdir (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.BIDSFreeSurferDir"]], "bidsinfo (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.BIDSInfo"]], "derivativesdatasink (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.DerivativesDataSink"]], "readsidecarjson (class in niworkflows.interfaces.bids)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON"]], "layout (niworkflows.interfaces.bids.readsidecarjson attribute)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON.layout"]], "niworkflows.interfaces.bids": [[16, "module-niworkflows.interfaces.bids"]], "out_path_base (niworkflows.interfaces.bids.derivativesdatasink attribute)": [[16, "niworkflows.interfaces.bids.DerivativesDataSink.out_path_base"]], "output_spec (niworkflows.interfaces.bids.bidsinfo attribute)": [[16, "niworkflows.interfaces.bids.BIDSInfo.output_spec"]], "output_spec (niworkflows.interfaces.bids.readsidecarjson attribute)": [[16, "niworkflows.interfaces.bids.ReadSidecarJSON.output_spec"]], "nonsteadystatesdetector (class in niworkflows.interfaces.bold)": [[17, "niworkflows.interfaces.bold.NonsteadyStatesDetector"]], "niworkflows.interfaces.bold": [[17, "module-niworkflows.interfaces.bold"]], "ciftinamesource (class in niworkflows.interfaces.cifti)": [[18, "niworkflows.interfaces.cifti.CiftiNameSource"]], "generatecifti (class in niworkflows.interfaces.cifti)": [[18, "niworkflows.interfaces.cifti.GenerateCifti"]], "niworkflows.interfaces.cifti": [[18, "module-niworkflows.interfaces.cifti"]], "expandmodel (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.ExpandModel"]], "normalizemotionparams (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.NormalizeMotionParams"]], "spikeregressors (class in niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.SpikeRegressors"]], "exponential_terms() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.exponential_terms"]], "niworkflows.interfaces.confounds": [[19, "module-niworkflows.interfaces.confounds"]], "parse_expression() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.parse_expression"]], "parse_formula() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.parse_formula"]], "spike_regressors() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.spike_regressors"]], "temporal_derivatives() (in module niworkflows.interfaces.confounds)": [[19, "niworkflows.interfaces.confounds.temporal_derivatives"]], "data_dir() (in module niworkflows.interfaces.conftest)": [[20, "niworkflows.interfaces.conftest.data_dir"]], "niworkflows.interfaces.conftest": [[20, "module-niworkflows.interfaces.conftest"]], "fixheaderapplytransforms (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixHeaderApplyTransforms"]], "fixheaderregistration (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixHeaderRegistration"]], "fixn4biasfieldcorrection (class in niworkflows.interfaces.fixes)": [[21, "niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"]], "niworkflows.interfaces.fixes": [[21, "module-niworkflows.interfaces.fixes"]], "fsdetectinputs (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.FSDetectInputs"]], "fsinjectbrainextracted (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.FSInjectBrainExtracted"]], "makemidthickness (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.MakeMidthickness"]], "medialnans (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.MedialNaNs"]], "patchedbbregisterrpt (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedBBRegisterRPT"]], "patchedconcatenatelta (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedConcatenateLTA"]], "patchedltaconvert (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedLTAConvert"]], "patchedmricoregrpt (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedMRICoregRPT"]], "patchedrobustregister (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.PatchedRobustRegister"]], "refinebrainmask (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.RefineBrainMask"]], "structuralreference (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.StructuralReference"]], "truncatelta (class in niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.TruncateLTA"]], "cmdline (niworkflows.interfaces.freesurfer.makemidthickness property)": [[22, "niworkflows.interfaces.freesurfer.MakeMidthickness.cmdline"]], "cmdline (niworkflows.interfaces.freesurfer.structuralreference property)": [[22, "niworkflows.interfaces.freesurfer.StructuralReference.cmdline"]], "detect_inputs() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.detect_inputs"]], "fix_lta_length() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.fix_lta_length"]], "grow_mask() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.grow_mask"]], "inject_skullstripped() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.inject_skullstripped"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedconcatenatelta attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedConcatenateLTA.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedltaconvert attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedLTAConvert.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.patchedrobustregister attribute)": [[22, "niworkflows.interfaces.freesurfer.PatchedRobustRegister.lta_outputs"]], "lta_outputs (niworkflows.interfaces.freesurfer.truncatelta attribute)": [[22, "niworkflows.interfaces.freesurfer.TruncateLTA.lta_outputs"]], "medial_wall_to_nan() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.medial_wall_to_nan"]], "mri_info() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.mri_info"]], "niworkflows.interfaces.freesurfer": [[22, "module-niworkflows.interfaces.freesurfer"]], "refine_aseg() (in module niworkflows.interfaces.freesurfer)": [[22, "niworkflows.interfaces.freesurfer.refine_aseg"]], "copyheader (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.CopyHeader"]], "copyxform (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.CopyXForm"]], "matchheader (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.MatchHeader"]], "sanitizeimage (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.SanitizeImage"]], "validateimage (class in niworkflows.interfaces.header)": [[23, "niworkflows.interfaces.header.ValidateImage"]], "niworkflows.interfaces.header": [[23, "module-niworkflows.interfaces.header"]], "output_spec (niworkflows.interfaces.header.copyxform attribute)": [[23, "niworkflows.interfaces.header.CopyXForm.output_spec"]], "conform (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.Conform"]], "intramodalmerge (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.IntraModalMerge"]], "regridtozooms (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.RegridToZooms"]], "robustaverage (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.RobustAverage"]], "signalextraction (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.SignalExtraction"]], "templatedimensions (class in niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.TemplateDimensions"]], "niworkflows.interfaces.images": [[24, "module-niworkflows.interfaces.images"]], "normalize_xform() (in module niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.normalize_xform"]], "reorient() (in module niworkflows.interfaces.images)": [[24, "niworkflows.interfaces.images.reorient"]], "mcflirt2itk (class in niworkflows.interfaces.itk)": [[25, "niworkflows.interfaces.itk.MCFLIRT2ITK"]], "multiapplytransforms (class in niworkflows.interfaces.itk)": [[25, "niworkflows.interfaces.itk.MultiApplyTransforms"]], "niworkflows.interfaces.itk": [[25, "module-niworkflows.interfaces.itk"]], "binarydilation (class in niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.BinaryDilation"]], "binarysubtraction (class in niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.BinarySubtraction"]], "image_binary_dilation() (in module niworkflows.interfaces.morphology)": [[26, "niworkflows.interfaces.morphology.image_binary_dilation"]], "niworkflows.interfaces.morphology": [[26, "module-niworkflows.interfaces.morphology"]], "applymask (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.ApplyMask"]], "binarize (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.Binarize"]], "binarydilation (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.BinaryDilation"]], "demeanimage (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.DemeanImage"]], "filledimagelike (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.FilledImageLike"]], "generatesamplingreference (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.GenerateSamplingReference"]], "intensityclip (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.IntensityClip"]], "maplabels (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MapLabels"]], "mergerois (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MergeROIs"]], "mergeseries (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.MergeSeries"]], "regridtozooms (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.RegridToZooms"]], "reorientimage (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.ReorientImage"]], "splitseries (class in niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.SplitSeries"]], "niworkflows.interfaces.nibabel": [[27, "module-niworkflows.interfaces.nibabel"]], "reorient_file() (in module niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.reorient_file"]], "reorient_image() (in module niworkflows.interfaces.nibabel)": [[27, "niworkflows.interfaces.nibabel.reorient_image"]], "computeepimask (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.ComputeEPIMask"]], "maskepi (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.MaskEPI"]], "merge (class in niworkflows.interfaces.nilearn)": [[28, "niworkflows.interfaces.nilearn.Merge"]], "niworkflows.interfaces.nilearn": [[28, "module-niworkflows.interfaces.nilearn"]], "concatenatexfms (class in niworkflows.interfaces.nitransforms)": [[29, "niworkflows.interfaces.nitransforms.ConcatenateXFMs"]], "concatenate_xfms() (in module niworkflows.interfaces.nitransforms)": [[29, "niworkflows.interfaces.nitransforms.concatenate_xfms"]], "niworkflows.interfaces.nitransforms": [[29, "module-niworkflows.interfaces.nitransforms"]], "spatialnormalization (class in niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.SpatialNormalization"]], "create_cfm() (in module niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.create_cfm"]], "mask() (in module niworkflows.interfaces.norm)": [[30, "niworkflows.interfaces.norm.mask"]], "niworkflows.interfaces.norm": [[30, "module-niworkflows.interfaces.norm"]], "robustacompcor (class in niworkflows.interfaces.patches)": [[31, "niworkflows.interfaces.patches.RobustACompCor"]], "robusttcompcor (class in niworkflows.interfaces.patches)": [[31, "niworkflows.interfaces.patches.RobustTCompCor"]], "niworkflows.interfaces.patches": [[31, "module-niworkflows.interfaces.patches"]], "compcorvarianceplot (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.CompCorVariancePlot"]], "confoundscorrelationplot (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.ConfoundsCorrelationPlot"]], "fmrisummary (class in niworkflows.interfaces.plotting)": [[32, "niworkflows.interfaces.plotting.FMRISummary"]], "niworkflows.interfaces.plotting": [[32, "module-niworkflows.interfaces.plotting"]], "addtpms (class in niworkflows.interfaces.probmaps)": [[33, "niworkflows.interfaces.probmaps.AddTPMs"]], "tpm2roi (class in niworkflows.interfaces.probmaps)": [[33, "niworkflows.interfaces.probmaps.TPM2ROI"]], "niworkflows.interfaces.probmaps": [[33, "module-niworkflows.interfaces.probmaps"]], "niworkflows.interfaces.reportlets": [[34, "module-niworkflows.interfaces.reportlets"]], "registrationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.RegistrationRC"]], "reportinginterface (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.ReportingInterface"]], "segmentationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.SegmentationRC"]], "surfacesegmentationrc (class in niworkflows.interfaces.reportlets.base)": [[35, "niworkflows.interfaces.reportlets.base.SurfaceSegmentationRC"]], "niworkflows.interfaces.reportlets.base": [[35, "module-niworkflows.interfaces.reportlets.base"]], "acompcorrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.ACompCorRPT"]], "betrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.BETRPT"]], "brainextractionrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.BrainExtractionRPT"]], "roisplot (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.ROIsPlot"]], "simpleshowmaskrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.SimpleShowMaskRPT"]], "tcompcorrpt (class in niworkflows.interfaces.reportlets.masks)": [[36, "niworkflows.interfaces.reportlets.masks.TCompCorRPT"]], "niworkflows.interfaces.reportlets.masks": [[36, "module-niworkflows.interfaces.reportlets.masks"]], "antsapplytransformsrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ANTSApplyTransformsRPT"]], "antsregistrationrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ANTSRegistrationRPT"]], "applytopuprpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ApplyTOPUPRPT"]], "applyxfmrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ApplyXFMRPT"]], "bbregisterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.BBRegisterRPT"]], "flirtrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.FLIRTRPT"]], "fuguerpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.FUGUERPT"]], "mricoregrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.MRICoregRPT"]], "resamplebeforeafterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.ResampleBeforeAfterRPT"]], "simplebeforeafterrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.SimpleBeforeAfterRPT"]], "spatialnormalizationrpt (class in niworkflows.interfaces.reportlets.registration)": [[37, "niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT"]], "niworkflows.interfaces.reportlets.registration": [[37, "module-niworkflows.interfaces.reportlets.registration"]], "fastrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.FASTRPT"]], "ica_aromarpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.ICA_AROMARPT"]], "melodicrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.MELODICRPT"]], "reconallrpt (class in niworkflows.interfaces.reportlets.segmentation)": [[38, "niworkflows.interfaces.reportlets.segmentation.ReconAllRPT"]], "niworkflows.interfaces.reportlets.segmentation": [[38, "module-niworkflows.interfaces.reportlets.segmentation"]], "spacedatasource (class in niworkflows.interfaces.space)": [[39, "niworkflows.interfaces.space.SpaceDataSource"]], "niworkflows.interfaces.space": [[39, "module-niworkflows.interfaces.space"]], "csvtogifti (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.CSVToGifti"]], "createsurfaceroi (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.CreateSurfaceROI"]], "giftinamesource (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiNameSource"]], "giftisetanatomicalstructure (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiSetAnatomicalStructure"]], "giftitocsv (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.GiftiToCSV"]], "normalizesurf (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.NormalizeSurf"]], "plytogifti (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.PLYtoGifti"]], "path2bids (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.Path2BIDS"]], "poissonrecon (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.PoissonRecon"]], "surfacestopointcloud (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.SurfacesToPointCloud"]], "unzipjoinedsurfaces (class in niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.UnzipJoinedSurfaces"]], "get_gii_meta() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.get_gii_meta"]], "load_transform() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.load_transform"]], "niworkflows.interfaces.surf": [[40, "module-niworkflows.interfaces.surf"]], "normalize_surfs() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.normalize_surfs"]], "output_spec (niworkflows.interfaces.surf.path2bids attribute)": [[40, "niworkflows.interfaces.surf.Path2BIDS.output_spec"]], "ply2gii() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.ply2gii"]], "pointcloud2ply() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.pointcloud2ply"]], "vertex_normals() (in module niworkflows.interfaces.surf)": [[40, "niworkflows.interfaces.surf.vertex_normals"]], "addtsvheader (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.AddTSVHeader"]], "dictmerge (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.DictMerge"]], "jointsvcolumns (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.JoinTSVColumns"]], "keyselect (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.KeySelect"]], "tsv2json (class in niworkflows.interfaces.utility)": [[41, "niworkflows.interfaces.utility.TSV2JSON"]], "input_spec (niworkflows.interfaces.utility.keyselect attribute)": [[41, "niworkflows.interfaces.utility.KeySelect.input_spec"]], "niworkflows.interfaces.utility": [[41, "module-niworkflows.interfaces.utility"]], "output_spec (niworkflows.interfaces.utility.keyselect attribute)": [[41, "niworkflows.interfaces.utility.KeySelect.output_spec"]], "metricdilate (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricDilate"]], "metricfillholes (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricFillHoles"]], "metricmask (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricMask"]], "metricremoveislands (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricRemoveIslands"]], "metricresample (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.MetricResample"]], "openmpcommandmixin (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.OpenMPCommandMixin"]], "volumetosurfacemapping (class in niworkflows.interfaces.workbench)": [[42, "niworkflows.interfaces.workbench.VolumeToSurfaceMapping"]], "niworkflows.interfaces.workbench": [[42, "module-niworkflows.interfaces.workbench"]], "run() (niworkflows.interfaces.workbench.openmpcommandmixin method)": [[42, "niworkflows.interfaces.workbench.OpenMPCommandMixin.run"]], "generate_reports() (in module niworkflows.reports)": [[43, "niworkflows.reports.generate_reports"]], "niworkflows.reports": [[43, "module-niworkflows.reports"]], "element (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Element"]], "report (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Report"]], "reportlet (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Reportlet"]], "smallest (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.Smallest"]], "subreport (class in niworkflows.reports.core)": [[44, "niworkflows.reports.core.SubReport"]], "generate_report() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.generate_report"]], "generate_reports() (in module niworkflows.reports.core)": [[44, "niworkflows.reports.core.generate_reports"]], "index() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.index"]], "init_layout() (niworkflows.reports.core.report method)": [[44, "niworkflows.reports.core.Report.init_layout"]], "is_empty() (niworkflows.reports.core.reportlet method)": [[44, "niworkflows.reports.core.Reportlet.is_empty"]], "niworkflows.reports.core": [[44, "module-niworkflows.reports.core"]], "run_reports() (in module niworkflows.reports.core)": [[44, "niworkflows.reports.core.run_reports"]], "niworkflows.utils": [[45, "module-niworkflows.utils"]], "bidserror": [[46, "niworkflows.utils.bids.BIDSError"]], "bidswarning": [[46, "niworkflows.utils.bids.BIDSWarning"]], "check_pipeline_version() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.check_pipeline_version"]], "collect_data() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.collect_data"]], "collect_participants() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.collect_participants"]], "get_metadata_for_nifti() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.get_metadata_for_nifti"]], "group_multiecho() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.group_multiecho"]], "niworkflows.utils.bids": [[46, "module-niworkflows.utils.bids"]], "relative_to_root() (in module niworkflows.utils.bids)": [[46, "niworkflows.utils.bids.relative_to_root"]], "listify() (in module niworkflows.utils.connections)": [[47, "niworkflows.utils.connections.listify"]], "niworkflows.utils.connections": [[47, "module-niworkflows.utils.connections"]], "pop_file() (in module niworkflows.utils.connections)": [[47, "niworkflows.utils.connections.pop_file"]], "is_interactive() (in module niworkflows.utils.debug)": [[48, "niworkflows.utils.debug.is_interactive"]], "niworkflows.utils.debug": [[48, "module-niworkflows.utils.debug"]], "setup_exceptionhook() (in module niworkflows.utils.debug)": [[48, "niworkflows.utils.debug.setup_exceptionhook"]], "demean() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.demean"]], "dseg_label() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.dseg_label"]], "nii_ones_like() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.nii_ones_like"]], "niworkflows.utils.images": [[49, "module-niworkflows.utils.images"]], "overwrite_header() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.overwrite_header"]], "resample_by_spacing() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.resample_by_spacing"]], "rotate_affine() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.rotate_affine"]], "rotation2canonical() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.rotation2canonical"]], "set_consumables() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.set_consumables"]], "unsafe_write_nifti_header_and_data() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.unsafe_write_nifti_header_and_data"]], "update_header_fields() (in module niworkflows.utils.images)": [[49, "niworkflows.utils.images.update_header_fields"]], "add_suffix() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.add_suffix"]], "clean_directory() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.clean_directory"]], "fix_multi_t1w_source_name() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.fix_multi_T1w_source_name"]], "get_template_specs() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.get_template_specs"]], "niworkflows.utils.misc": [[50, "module-niworkflows.utils.misc"]], "read_crashfile() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.read_crashfile"]], "splitext() (in module niworkflows.utils.misc)": [[50, "niworkflows.utils.misc.splitext"]], "fsaverage_density (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.FSAVERAGE_DENSITY"]], "fsaverage_legacy (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.FSAVERAGE_LEGACY"]], "nonstandard_references (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.NONSTANDARD_REFERENCES"]], "outputreferencesaction (class in niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.OutputReferencesAction"]], "reference (class in niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.Reference"]], "spatialreferences (class in niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.SpatialReferences"]], "add() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.add"]], "append() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.append"]], "cached (niworkflows.utils.spaces.spatialreferences property)": [[51, "niworkflows.utils.spaces.SpatialReferences.cached"]], "check_space() (niworkflows.utils.spaces.spatialreferences static method)": [[51, "niworkflows.utils.spaces.SpatialReferences.check_space"]], "checkpoint() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.checkpoint"]], "dim (niworkflows.utils.spaces.reference attribute)": [[51, "niworkflows.utils.spaces.Reference.dim"]], "format_reference() (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.format_reference"]], "from_string() (niworkflows.utils.spaces.reference class method)": [[51, "niworkflows.utils.spaces.Reference.from_string"]], "fullname (niworkflows.utils.spaces.reference property)": [[51, "niworkflows.utils.spaces.Reference.fullname"]], "get_fs_spaces() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.get_fs_spaces"]], "get_nonstandard() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.get_nonstandard"]], "get_spaces() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.get_spaces"]], "get_standard() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.get_standard"]], "hasspec() (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.hasspec"]], "insert() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.insert"]], "is_cached() (niworkflows.utils.spaces.spatialreferences method)": [[51, "niworkflows.utils.spaces.SpatialReferences.is_cached"]], "legacyname (niworkflows.utils.spaces.reference property)": [[51, "niworkflows.utils.spaces.Reference.legacyname"]], "niworkflows.utils.spaces": [[51, "module-niworkflows.utils.spaces"]], "reference2dict() (in module niworkflows.utils.spaces)": [[51, "niworkflows.utils.spaces.reference2dict"]], "references (niworkflows.utils.spaces.spatialreferences property)": [[51, "niworkflows.utils.spaces.SpatialReferences.references"]], "space (niworkflows.utils.spaces.reference attribute)": [[51, "niworkflows.utils.spaces.Reference.space"]], "spec (niworkflows.utils.spaces.reference attribute)": [[51, "niworkflows.utils.spaces.Reference.spec"]], "standard (niworkflows.utils.spaces.reference attribute)": [[51, "niworkflows.utils.spaces.Reference.standard"]], "standard_spaces (niworkflows.utils.spaces.spatialreferences attribute)": [[51, "niworkflows.utils.spaces.SpatialReferences.standard_spaces"]], "combine_entities() (in module niworkflows.utils.testing)": [[52, "niworkflows.utils.testing.combine_entities"]], "generate_bids_skeleton() (in module niworkflows.utils.testing)": [[52, "niworkflows.utils.testing.generate_bids_skeleton"]], "niworkflows.utils.testing": [[52, "module-niworkflows.utils.testing"]], "to_json() (in module niworkflows.utils.testing)": [[52, "niworkflows.utils.testing.to_json"]], "niworkflows.utils.timeseries": [[53, "module-niworkflows.utils.timeseries"]], "niworkflows.viz": [[54, "module-niworkflows.viz"]], "plot_carpet() (in module niworkflows.viz)": [[54, "niworkflows.viz.plot_carpet"]], "display() (in module niworkflows.viz.notebook)": [[55, "niworkflows.viz.notebook.display"]], "niworkflows.viz.notebook": [[55, "module-niworkflows.viz.notebook"]], "cifti_surfaces_plot() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.cifti_surfaces_plot"]], "compcor_variance_plot() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.compcor_variance_plot"]], "confoundplot() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.confoundplot"]], "confounds (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.confounds"]], "confounds_correlation_plot() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.confounds_correlation_plot"]], "fmriplot (class in niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.fMRIPlot"]], "niworkflows.viz.plots": [[56, "module-niworkflows.viz.plots"]], "nskip (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.nskip"]], "paired_carpet (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.paired_carpet"]], "plot() (niworkflows.viz.plots.fmriplot method)": [[56, "niworkflows.viz.plots.fMRIPlot.plot"]], "plot_carpet() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.plot_carpet"]], "segments (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.segments"]], "sort_carpet (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.sort_carpet"]], "spikes (niworkflows.viz.plots.fmriplot attribute)": [[56, "niworkflows.viz.plots.fMRIPlot.spikes"]], "spikesplot() (in module niworkflows.viz.plots)": [[56, "niworkflows.viz.plots.spikesplot"]], "spikesplot_cb() (in module 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niworkflows.viz.utils)": [[57, "niworkflows.viz.utils.robust_set_limits"]], "svg2str() (in module niworkflows.viz.utils)": [[57, "niworkflows.viz.utils.svg2str"]], "svg_compress() (in module niworkflows.viz.utils)": [[57, "niworkflows.viz.utils.svg_compress"]], "transform_to_2d() (in module niworkflows.viz.utils)": [[57, "niworkflows.viz.utils.transform_to_2d"]], "niworkflows.workflows": [[58, "module-niworkflows.workflows"]], "niworkflows.workflows.epi": [[59, "module-niworkflows.workflows.epi"]], "init_epi_reference_wf() (in module niworkflows.workflows.epi.refmap)": [[60, "niworkflows.workflows.epi.refmap.init_epi_reference_wf"]], "niworkflows.workflows.epi.refmap": [[60, "module-niworkflows.workflows.epi.refmap"]]}}) \ No newline at end of file