_quarto.yml

project: 
  type: website
  output-dir: docs
  render:
    - "*.*"
    - "!nasa-tutorials/*.ipynb"

execute:
  freeze: auto
  
website:
  page-navigation: true  
  title: "2024 NOAA HackDays"
  favicon: "images/favicon-16x16.png"
  site-url: https://nmfs-opensci.github.io/NOAAHackDays-2024
  repo-url: https://github.com/nmfs-opensci/NOAAHackDays-2024
  repo-actions: [edit, issue, source]
  
  page-footer: <img src="https://github.com/nmfs-opensci/assets/blob/main/logo/nmfs-opensci-logo2.png?raw=true" alt="NMFS Open Science logo" style="width:150px"><br />NMFS Open Science (2023)
 
  sidebar:
    logo: https://github.com/nmfs-opensci/assets/blob/main/logo/nmfs-opensci-logo2.png?raw=true
    pinned: true
    align: center
    
    style: "docked"
    collapse-level: 1
    toc-expand: false
    contents:
      - section: "Welcome"
        href: index.md
        contents:
          - overview.md
          - team.md
#          - schedule.md
          - setup.md
          - support.md
          - coc.md
      - section: "Tutorials"
        contents:
          - section: "Welcome"
            contents:
              - text: Welcome
                href: content/01-welcome.md
              - text: Geoscience cloud tools
                href: content/01-intro-to-cloud-geoscience.qmd
              - text: Jupyter hubs
                href: content/01-intro-to-jupyterhub.qmd
          - section: "Geospatial Analysis in R"
            contents:
              - text: Welcome
                href: content/01-welcome.md
          - section: "Git and GitHub Basics"
            contents:
              - text: GitHub 1
                href: content/01-github.md
              - text: GitHub 2
                href: content/02-github-2.md
              - text: Git in RStudio
                href: content/03-git-rstudio.md
          - section: "R and RStudio Basics"
            contents:
              - text: RStudio
                href: content/02-rstudio.qmd
              - text: Quarto
                href: content/02-quarto.qmd
              - text: Programming with AI
                href: content/03-ai.md
              - text: Loading data in R
                href: r-tutorials/03-r-read-in-data.qmd
              - text: Plotting with ggplot2
                href: r-tutorials/04-r-ggplot2.qmd
              - text: Maps!
                href: r-tutorials/05-r-geospatial.qmd
          - section: "Marine SDMs"
            contents:
              - text: Lab Setup
                href: r-tutorials/Lab-setup.qmd
              - text: SDM 1
                href: r-tutorials/SDM-lab1.qmd
              - text: robis
                href: r-tutorials/SDM-lab-robis.qmd
              - text: spocc
                href: r-tutorials/SDM-lab-spocc.qmd
              - text: MaxEnt SDM
                href: r-tutorials/Turtle_maxnet.qmd
      - section: "Projects"
        contents:
          - projects/index.md
          - projects/hackathon-projects.md
#      - section: "Further Resources"
#        contents:
#          - content/XX-r-and-python-resources.md
#          - content/XX-further-resources.md
      - section: "Python Tutorials"
        contents:
          - section: "Data Access"
            contents:
              - python-notebooks/00_NASA_Earthdata_Authentication.ipynb
              - python-notebooks/01_earthaccess_Downloader.ipynb
              - python-notebooks/01_ERA5_S3_Downloader.ipynb
              - python-notebooks/01_ERDDAP_Downloader.ipynb
              - python-notebooks/01_MOTU_Downloader.ipynb
          - section: "Using Data"
            contents:
              - python-notebooks/02_Using_Data.ipynb
              - python-notebooks/02_Graphing_Data.ipynb
              - python-notebooks/02_Zarr_Access_netCDF.ipynb
              - python-notebooks/02_Xarray_hvplot.ipynb
              - python-notebooks/02_Xarray_hvplot.ipynb              
          - section: "Machine Learning"
            contents:
          - section: "Applications"
            contents:
          - section: "IO Zarr Database"
            contents:
              - python-notebooks/04_Combining_Data.ipynb
              - python-notebooks/04_Appending_Data.ipynb
      - text: <img width=100px>
      - text: <img src="/images/noaa_emblem_logo-2022.png" width=100px>
        href: https://fisheries.noaa.gov
  navbar:
    background: primary
    search: true
    right: 
      - icon: server
        href: https://dhub.opensci.live/
        text: "JupyterHub"
      - icon: wechat
        href: https://github.com/nmfs-opensci/NOAAHackDays-2024/discussions
        text: "Discussions"
#      - icon: slack
#        href: https://app.slack.com/client/T05PV2USY56/C05P7QP47UL
#        text: "Slack"
      - icon: globe
        href: https://github.com/nmfs-opensci
        text: "GH org"


format:
  html:
    theme:
      light: cosmo
      dark: [cosmo, theme-dark.scss]
    code-background: true
    code-copy: true
    css: styles.css
    toc: true
    toc-depth: 2
    include-before-body: translate.html

filters:
  - include-files.lua
  - quarto