Cargo.toml

[package]
name = "gia"
version = "0.2.23"
edition = "2021"
description = "A tool for set theoretic operations of genomic intervals"
license = "MIT"
homepage = "https://noamteyssier.github.io/gia"
repository = "https://github.com/noamteyssier/gia"
categories = ["science", "command-line-utilities"]
keywords = ["genomics", "bioinformatics", "bed", "set", "interval"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
anyhow = "1.0.81"
bedrs = { version = "0.2.24", features = ["serde", "rayon"] }
bstr = "1.9.1"
clap = { version = "4.4.18", features = ["derive"] }
csv = "1.3.0"
dashmap = { version = "5.5.3", features = ["serde"] }
faiquery = "0.1.3"
hashbrown = "0.14.3"
human-sort = "0.2.2"
memmap2 = "0.9.4"
rand = "0.8.5"
rand_chacha = "0.3.1"
serde = { version = "1.0.197", features = ["derive"] }
niffler = { version = "2.5.0", default-features = false, features = ["gz"] }
gzp = { version = "0.11.3", features = [
  "deflate_rust",
], default-features = false }
rayon = "1.10.0"
flate2 = "1.0.28"
rust-htslib = { version = "0.46.0", default-features = false }
paste = "1.0.14"

[dev-dependencies]
assert_cmd = "2.0.14"
predicates = "3.1.0"

[profile.release]
lto = true