Broken type matching #234
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bug
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ndaelman-hu
added
the
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|
Can you please attach some example log? |
Sure, it's the part failing atm, actually, but here goes (errors only): ============================= test session starts ==============================
platform linux -- Python 3.9.19, pytest-3.10.0, py-1.11.0, pluggy-1.5.0 -- /opt/hostedtoolcache/Python/3.9.19/x64/bin/python
cachedir: .pytest_cache
rootdir: /home/runner/work/electronic-parsers/electronic-parsers, inifile:
plugins: cov-2.7.1, timeout-1.4.2, anyio-4.4.0
=================================== FAILURES ===================================
___________________________________ test_gw ____________________________________
self = TextParser(A1.abo) --> 1 parsed quantities (model), quantity = params
value = ['plane-waves for SigmaX 1759', 'plane-waves for SigmaC and W 259', 'plane-waves for wave... 512', 'independent spin polarizations 1', 'spinorial components 1', ...]
units = [None, None, None, None, None, None, ...]
def _add_value(self, quantity: Quantity, value: List[str], units):
"""
Converts the list of parsed blocks into data and apply the corresponding units.
"""
try:
> value_processed = [quantity.to_data(val) for val in value]
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:401:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.0 = <list_iterator object at 0x7fd5b177a970>
> value_processed = [quantity.to_data(val) for val in value]
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:401:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = params, val_raw = 'plane-waves for SigmaX 1759'
def to_data(self, val_raw: str):
"""
Converts the parsed block into data.
"""
def convert(val):
if isinstance(val, str):
if self.dtype is None:
if val.isdecimal():
return int(val)
else:
try:
return float(val)
except Exception:
pass
else:
try:
return self.dtype(val)
except Exception:
pass
return val
elif isinstance(val, (list, np.ndarray)):
try:
dtype = float if self.dtype is None else self.dtype
val_test = np.array(val, dtype=dtype)
if self.dtype is None:
if np.all(np.mod(val_test, 1) == 0):
val_test = np.array(val_test, dtype=int)
dtype = int
return val_test
except Exception:
self.dtype = None
return [convert(v) for v in val]
elif isinstance(val, dict):
return {k: convert(v) for k, v in val.items()}
else:
return val
if not val_raw:
return
if self.comment is not None:
if val_raw.strip()[0] == self.comment:
return
data: Any = val_raw
if self.str_operation is not None:
> data = self.str_operation(val_raw)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:226:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
val_in = 'plane-waves for SigmaX 1759'
def params_to_pairs(val_in):
key = '_'.join(val_in.split()[:-1]).replace('-', '_')
> value = np.int(val_in.split()[-1])
electronicparsers/abinit/parser.py:982:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'int'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
> raise AttributeError(__former_attrs__[attr])
E AttributeError: module 'numpy' has no attribute 'int'.
E `np.int` was a deprecated alias for the builtin `int`. To avoid this error in existing code, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
E The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/numpy/__init__.py:324: AttributeError
During handling of the above exception, another exception occurred:
parser = <electronicparsers.abinit.parser.AbinitParser object at 0x7fd5b125f460>
def test_gw(parser):
archive = EntryArchive()
parser._calculation_type = 'gw'
> parser.parse('tests/data/abinit/ZrO2_GW/A1.abo', archive, None)
tests/test_abinitparser.py:123:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
electronicparsers/abinit/parser.py:1836: in parse
self.dataset = self.out_parser.get('dataset', [])
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/file_parser.py:160: in get
val = self.results.get(key)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/file_parser.py:75: in results
self.parse(self._key, **self._kwargs)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:560: in parse
self._parse_quantity(quantity)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:496: in _parse_quantity
value.append(sub_parser.parse())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:560: in parse
self._parse_quantity(quantity)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:496: in _parse_quantity
value.append(sub_parser.parse())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:551: in parse
self._parse_quantities(quantities_findall)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:475: in _parse_quantities
self._add_value(quantity, values, units)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:416: in _add_value
self.logger.warning(
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/logging/__init__.py:2082: in warning
root.warning(msg, *args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <RootLogger root (DEBUG)>, msg = 'Error setting value', args = ()
kwargs = {'data': {'quantity': 'params'}}
def warning(self, msg, *args, **kwargs):
"""
Log 'msg % args' with severity 'WARNING'.
To pass exception information, use the keyword argument exc_info with
a true value, e.g.
logger.warning("Houston, we have a %s", "bit of a problem", exc_info=1)
"""
if self.isEnabledFor(WARNING):
> self._log(WARNING, msg, args, **kwargs)
E TypeError: _log() got an unexpected keyword argument 'data'
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/logging/__init__.py:1458: TypeError
___________________________________ test_gw ____________________________________
parser = <electronicparsers.fhiaims.parser.FHIAimsParser object at 0x7fd5b177c400>
def test_gw(parser):
"""Tests for GW calculations in an atom, He"""
archive = EntryArchive()
parser._calculation_type = 'gw'
> parser.parse('tests/data/fhiaims/He_gw/He_scGW_ontop_PBE.out', archive, None)
tests/test_fhiaimsparser.py:337:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
electronicparsers/fhiaims/parser.py:2557: in parse
self.parse_gw()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <electronicparsers.fhiaims.parser.FHIAimsParser object at 0x7fd5b177c400>
def parse_gw(self):
sec_run = self.archive.run[-1]
# GW method
sec_method = Method()
sec_run.method.append(sec_method)
# GW
sec_gw = GW()
sec_method.gw = sec_gw
sec_gw.type = self._gw_flag_map.get(self.out_parser.get('gw_flag'), None)
sec_gw.n_states = self.out_parser.get('n_states_gw')
# KMesh
if self.out_parser.get('k_grid') is not None:
sec_k_mesh = KMesh()
sec_method.k_mesh = sec_k_mesh
sec_k_mesh.grid = self.out_parser.get('k_grid')
# QMesh copied from KMesh
sec_gw.m_add_sub_section(GW.q_mesh, sec_k_mesh)
# Analytical continuation
sec_gw.analytical_continuation = self.gw_analytical_continuation[
self.out_parser.get('anacon_type', 1)
]
# FrequencyMesh
frequency_data = self.out_parser.get('frequency_data', [])
if len(frequency_data) > 0:
> freq_points = np.array(frequency_data)[:, 1] * ureg.hartree
E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (20, 2) + inhomogeneous part.
electronicparsers/fhiaims/parser.py:1426: ValueError
_________________________________ test_gw_eigs _________________________________
parser = <electronicparsers.fhiaims.parser.FHIAimsParser object at 0x7fd5b177c400>
def test_gw_eigs(parser):
"""Tests for GW calculations in a molecule, CHN"""
archive = EntryArchive()
> parser.parse('tests/data/fhiaims/CHN_gw/output.out', archive, None)
tests/test_fhiaimsparser.py:375:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
electronicparsers/fhiaims/parser.py:2557: in parse
self.parse_gw()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <electronicparsers.fhiaims.parser.FHIAimsParser object at 0x7fd5b177c400>
def parse_gw(self):
sec_run = self.archive.run[-1]
# GW method
sec_method = Method()
sec_run.method.append(sec_method)
# GW
sec_gw = GW()
sec_method.gw = sec_gw
sec_gw.type = self._gw_flag_map.get(self.out_parser.get('gw_flag'), None)
sec_gw.n_states = self.out_parser.get('n_states_gw')
# KMesh
if self.out_parser.get('k_grid') is not None:
sec_k_mesh = KMesh()
sec_method.k_mesh = sec_k_mesh
sec_k_mesh.grid = self.out_parser.get('k_grid')
# QMesh copied from KMesh
sec_gw.m_add_sub_section(GW.q_mesh, sec_k_mesh)
# Analytical continuation
sec_gw.analytical_continuation = self.gw_analytical_continuation[
self.out_parser.get('anacon_type', 1)
]
# FrequencyMesh
frequency_data = self.out_parser.get('frequency_data', [])
if len(frequency_data) > 0:
> freq_points = np.array(frequency_data)[:, 1] * ureg.hartree
E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (200, 2) + inhomogeneous part.
electronicparsers/fhiaims/parser.py:1426: ValueError
______________________________ test_scf_multirun _______________________________
parser = <electronicparsers.gaussian.parser.GaussianParser object at 0x7fd5ad496400>
def test_scf_multirun(parser):
archive = EntryArchive()
> parser.parse('tests/data/gaussian/Al_multistep/m61b5.out', archive, None)
tests/test_gaussianparser.py:88:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
electronicparsers/gaussian/parser.py:1537: in parse
runs = self.out_parser.get('run', [])
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = GaussianOutParser(m61b5.out) --> 2 parsed quantities (program, x_gaussian_memory)
key = 'run', default = [], unit = None, kwargs = {}
def get(
self,
key: str,
default: Any = None,
unit: Union[pint.Unit, pint.Quantity] = None,
**kwargs,
):
"""
Returns the parsed result for quantity with name key. If quantity is not in
results default will be returned. A pint unit can be provided which is attached
to the returned value.
"""
if self.mainfile is None:
return default
self._key = key
self._kwargs = kwargs
> val = self.results.get(key)
E AttributeError: 'NoneType' object has no attribute 'get'
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/file_parser.py:160: AttributeError
__________________________________ test_freq ___________________________________
parser = <electronicparsers.gaussian.parser.GaussianParser object at 0x7fd5ad496400>
def test_freq(parser):
archive = EntryArchive()
> parser.parse('tests/data/gaussian/CHO_freq/prono.out', archive, None)
tests/test_gaussianparser.py:137:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
electronicparsers/gaussian/parser.py:1537: in parse
runs = self.out_parser.get('run', [])
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = GaussianOutParser(prono.out) --> 3 parsed quantities (program, x_gaussian_memory, x_gaussian_number_of_processors)
key = 'run', default = [], unit = None, kwargs = {}
def get(
self,
key: str,
default: Any = None,
unit: Union[pint.Unit, pint.Quantity] = None,
**kwargs,
):
"""
Returns the parsed result for quantity with name key. If quantity is not in
results default will be returned. A pint unit can be provided which is attached
to the returned value.
"""
if self.mainfile is None:
return default
self._key = key
self._kwargs = kwargs
> val = self.results.get(key)
E AttributeError: 'NoneType' object has no attribute 'get'
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/file_parser.py:160: AttributeError
_________________________________ test_parser __________________________________
parser = <electronicparsers.tbstudio.parser.TBStudioParser object at 0x7fd5ad56c970>
def test_parser(parser):
archive = EntryArchive()
parser.parse('tests/data/tbstudio/graphenePz.tbm', archive, None)
sec_run = archive.run[-1]
sec_program = sec_run.program
assert sec_program.name == 'TBStudio'
assert sec_program.version == '2.0'
assert len(sec_run.system) == 1
sec_system = sec_run.system[-1]
assert sec_system.atoms.labels == ['C', 'C']
a = [1.23435, 2.14452, 0.0]
b = [1.23435, -2.14452, 0.0]
c = [0.0, 0.0, 20.0]
positions = [[0.00414, -0.004863, 10.0], [1.238611, -0.72006, 10.0]]
> assert sec_system.atoms.lattice_vectors.to('angstrom').magnitude == approx(
np.array([a, b, c])
)
tests/test_tbstudioparser.py:52:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/_pytest/python_api.py:137: in __eq__
return ApproxBase.__eq__(self, actual)
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/_pytest/python_api.py:70: in __eq__
return all(
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/_pytest/python_api.py:70: in <genexpr>
return all(
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/_pytest/python_api.py:151: in _yield_comparisons
yield np.asscalar(actual[i]), np.asscalar(self.expected[i])
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
attr = 'asscalar'
def __getattr__(attr):
# Warn for expired attributes, and return a dummy function
# that always raises an exception.
import warnings
import math
try:
msg = __expired_functions__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
def _expired(*args, **kwds):
raise RuntimeError(msg)
return _expired
# Emit warnings for deprecated attributes
try:
val, msg = __deprecated_attrs__[attr]
except KeyError:
pass
else:
warnings.warn(msg, DeprecationWarning, stacklevel=2)
return val
if attr in __future_scalars__:
# And future warnings for those that will change, but also give
# the AttributeError
warnings.warn(
f"In the future `np.{attr}` will be defined as the "
"corresponding NumPy scalar.", FutureWarning, stacklevel=2)
if attr in __former_attrs__:
raise AttributeError(__former_attrs__[attr])
if attr == 'testing':
import numpy.testing as testing
return testing
elif attr == 'Tester':
"Removed in NumPy 1.25.0"
raise RuntimeError("Tester was removed in NumPy 1.25.")
> raise AttributeError("module {!r} has no attribute "
"{!r}".format(__name__, attr))
E AttributeError: module 'numpy' has no attribute 'asscalar'
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/numpy/__init__.py:333: AttributeError
------------------------------ Captured log call -------------------------------
parser.py 409 WARNING TBStudio Workflow was not found.
======= 6 failed, 186 passed, 1 skipped, 248 warnings in 254.39 seconds ======== |
|
I don't see any OpenMX error there, or am I missing something? |
My apologies, it'll have been a warning then. There were so many, manually processing the output is a bit overwhelming. I'll update the list. |
|
No problem, just send me the log (and steps to reproduce if possible) and I'll take a look at the OpenMX issues... |
tests/test_openmxparser.py::test_HfO2
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 162
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 274
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 326
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 368
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 417
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+([A-Z]{1}[a-z]{2}' (truncated) but at position 475
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 28
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 84
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'(?i)scf.Hubbard.U\\s+' (truncated) but at position 56
re_findall_b = re.compile(re_findall.encode())
tests/test_openmxparser.py::test_AlN
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 28
re_findall_b = re.compile(re_findall.encode())
tests/test_openmxparser.py::test_C2N2
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 28
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 57
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'(?i)scf.Hubbard.U\\s+' (truncated) but at position 29
re_findall_b = re.compile(re_findall.encode())
tests/test_openmxparser.py::test_CrO2
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 75
re_findall_b = re.compile(re_findall.encode())
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'MD\\.maxIter\\s+(\\d+)|' (truncated) but at position 47
re_findall_b = re.compile(re_findall.encode())
tests/test_openmxparser.py::test_graphite
/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/nomad/parsing/file_parser/text_parser.py:432: DeprecationWarning: Flags not at the start of the expression b'\\s+Elapsed.Time.\\s+(' (truncated) but at position 28
re_findall_b = re.compile(re_findall.encode()) |
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The application of stricter type tests is raising
pytesterrors in the following parsers (corrected):@ladinesa @JosePizarro3
and Pavle: This may also interest you.The text was updated successfully, but these errors were encountered: