From 5e8152e919557df907b08c95912c50aeef07ec8a Mon Sep 17 00:00:00 2001 From: mish-su <74434157+mish-su@users.noreply.github.com> Date: Thu, 15 Jun 2023 14:12:25 -0400 Subject: [PATCH] Update README.md --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 60bce55..d2660f4 100644 --- a/README.md +++ b/README.md @@ -8,6 +8,8 @@ This repository contains the New York City Public Health Laboratory local datase * pipeline.txt - Overview of pipeline and associated scripts Data files: + + Fasta files can be directly inputted into any software that takes multi-fasta format such as [pangolin](https://github.com/cov-lineages/pangolin) or [Nextclade](https://clades.nextstrain.org/). This is not to be confused with multiple sequence alignment (MSA), which aligns the sequences against each other instead of just listing them. * nyc_failed_aug-nov2021.fasta - Fasta file containing 469 genome consensus sequences for SARS-CoV-2 that had N >10%. * nyc_passed_aug-nov2021.fasta.xz - Compressed fasta file containing genome consensus sequences for SARS-CoV-2 that had N <10%.