Add descriptions to omim_import.owl

[cmungall]

No description provided.

[cmungall]

We currently pull the omim via this line in the makefile:

imports/omim_import.owl:
    owltools $(OBO)/upheno/data/disorders.owl --set-ontology-id $(OBO)/doid/$@ -o $@

These come from the monarch disco2turtle / https://github.com/monarch-initiative/dipper pipeline

[mellybelly]

@nlwashington @cmungall should we dump of all of omim ids with their labels, omim_id rdfs:label and then load the turtle into protege? Also, would be great to have the descriptions there too.

[nlwashington]

i've gotten a start on writing an OMIM adapter for dipper. i'll do some basic stuff and turn it over to @ShahimEssaid to then fetch out the rest of any details that might be needed.

[nlwashington]

see related ticket here: monarch-initiative/dipper#18

[nlwashington]

i've now added omim as a source in dipper. it trivially outputs the id, label, and description. i have not done any scrubbing of the labels to reformat them. it will list those that have "moved" as equivalent classes to the new id. it will also type those that are "removed" to be an owl:deprecatedClass.

@ShahimEssaid you can download the dipper code and run it to produce the ttl. you will need the config file with the api key, that i will send you in an email.