ModulesConda.txt

oschreib@farm:~$ sudo su - bio3user
bio3user@farm:~$ module load bio3
bio3user@farm:~$ conda create --name popvaebogus python=3.7
bio3user@farm:~$ source activate popvaebogus
(popvaebogus) bio3user@farm:~$ git clone https://github.com/cjbattey/popvae.git
[...]
(popvaebogus) bio3user@farm:~$ cd popvae
(popvaebogus) bio3user@farm:~/popvae$ python setup.py install
(popvaebogus) bio3user@farm:~/popvae$ exit
logout
oschreib@farm:~$ sudo su -
Module slurm/19.05.3 loaded 
Module openmpi/4.0.1 loaded 
root@farm:~# mkdir -p /share/apps/modulefiles/hpc/popvaebogus/
root@farm:~# cat /share/apps/modulefiles/hpc/popvaebogus/2021-01-20
#%Module1.0
# 2021-01-21: OW
# https://github.com/kr-colab/popvae
module unload bio
module unload bio3
module load bio3
proc ModulesHelp {} {
    puts stderr "   popVAE fits a variational autoencoder (VAE) to a set of genotypes and outputs the latent space.
    puts stderr "    https://github.com/kr-colab/popvae"
}
module-whatis "popVAE fits a variational autoencoder (VAE) to a set of genotypes and outputs the latent space."
if [module-info mode load] {
    puts stderr "popVAE is now installed in a conda environment with the bio3 module.\n"
    puts stderr "To enter the environment, run:"
    puts stderr "    source activate popvae\n"
    puts stderr "when done, run:"
    puts stderr "    source deactivate "
}
root@farm:~# module avail -l|egrep popvae
popvae/2021-01-20                                           2021/01/20 15:52:16
popvaebogus/2021-01-20                                      2021/01/20 19:43:09
root@farm:~#