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[REVIEW]: Basix: a runtime finite element basis evaluation library #3982

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whedon opened this issue Dec 8, 2021 · 55 comments
Closed
20 of 40 tasks

[REVIEW]: Basix: a runtime finite element basis evaluation library #3982

whedon opened this issue Dec 8, 2021 · 55 comments
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accepted C++ C CMake published Papers published in JOSS recommend-accept Papers recommended for acceptance in JOSS. review

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@whedon
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whedon commented Dec 8, 2021

Submitting author: @mscroggs (Matthew Scroggs)
Repository: https://github.com/FEniCS/basix
Branch with paper.md (empty if default branch):
Version: joss
Editor: @jedbrown
Reviewers: @tisaac, @wence-
Archive: 10.6084/m9.figshare.19794268.v1

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/a0c3fde86db28bd8c97d0dfe92d056f1"><img src="https://joss.theoj.org/papers/a0c3fde86db28bd8c97d0dfe92d056f1/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/a0c3fde86db28bd8c97d0dfe92d056f1/status.svg)](https://joss.theoj.org/papers/a0c3fde86db28bd8c97d0dfe92d056f1)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@tisaac & @wence-, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:

  1. Make sure you're logged in to your GitHub account
  2. Be sure to accept the invite at this URL: https://github.com/openjournals/joss-reviews/invitations

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @jedbrown know.

Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest

Review checklist for @tisaac

✨ Important: Please do not use the Convert to issue functionality when working through this checklist, instead, please open any new issues associated with your review in the software repository associated with the submission. ✨

Conflict of interest

  • I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Contribution and authorship: Has the submitting author (@mscroggs) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
  • Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
  • A statement of need: Does the paper have a section titled 'Statement of Need' that clearly states what problems the software is designed to solve and who the target audience is?
  • State of the field: Do the authors describe how this software compares to other commonly-used packages?
  • Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
  • References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

Review checklist for @wence-

✨ Important: Please do not use the Convert to issue functionality when working through this checklist, instead, please open any new issues associated with your review in the software repository associated with the submission. ✨

Conflict of interest

  • I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Contribution and authorship: Has the submitting author (@mscroggs) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
  • Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
  • A statement of need: Does the paper have a section titled 'Statement of Need' that clearly states what problems the software is designed to solve and who the target audience is?
  • State of the field: Do the authors describe how this software compares to other commonly-used packages?
  • Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
  • References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?
@whedon
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whedon commented Dec 8, 2021

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks. @tisaac, @wence- it looks like you're currently assigned to review this paper 🎉.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

⭐ Important ⭐

If you haven't already, you should seriously consider unsubscribing from GitHub notifications for this (https://github.com/openjournals/joss-reviews) repository. As a reviewer, you're probably currently watching this repository which means for GitHub's default behaviour you will receive notifications (emails) for all reviews 😿

To fix this do the following two things:

  1. Set yourself as 'Not watching' https://github.com/openjournals/joss-reviews:

watching

  1. You may also like to change your default settings for this watching repositories in your GitHub profile here: https://github.com/settings/notifications

notifications

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

@whedon
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whedon commented Dec 8, 2021

Wordcount for paper.md is 1189

@whedon
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whedon commented Dec 8, 2021

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.21 s (639.2 files/s, 137601.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
C++                             25           1086           1008          13628
Python                          43            874            938           3352
C/C++ Header                    25            656           2035           2517
Markdown                         8            154              0            448
SVG                              7            112              0            395
YAML                             6             49              9            393
CMake                            7             65             60            263
TeX                              1             21              0            205
HTML                             4              1              7             38
reStructuredText                 2             10             11             20
make                             2              7              6             15
TOML                             1              6              0             12
CSS                              1              5              0             11
-------------------------------------------------------------------------------
SUM:                           132           3046           4074          21297
-------------------------------------------------------------------------------


Statistical information for the repository 'c2639bb743affcb39fb0c2f5' was
gathered on 2021/12/08.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Adeeb Arif Kor                   3           165             67            0.26
Chris Richardson               227         14302           9403           26.37
Garth N. Wells                  89         11933          11498           26.07
Igor Baratta                    10           336            863            1.33
Jack S. Hale                     4            59             27            0.10
Jørgen Schartum Dokk             3            21             31            0.06
Massimiliano Leoni               1            11              2            0.01
Matthew Scroggs                182         30029          10261           44.82
Michal Habera                    1             0              4            0.00
igorbaratta                      1             1              1            0.00
nikhilTkur                       1           878              0            0.98

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Adeeb Arif Kor               99           60.0          6.4                8.08
Chris Richardson           1560           10.9         12.9               29.81
Garth N. Wells             3980           33.4          7.6               12.94
Igor Baratta                203           60.4          5.2               11.82
Jack S. Hale                 59          100.0          4.7                1.69
Jørgen Schartum Dokk         20           95.2          4.3               20.00
Matthew Scroggs           19565           65.2          4.9               13.81
nikhilTkur                  608           69.2          3.7                0.16

@whedon
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whedon commented Dec 8, 2021

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1145/1039813.1039820 is OK
- 10.11588/ans.2015.100.20553 is OK
- 10.1145/2566630 is OK
- 10.1007/BF01396415 is OK
- 10.1007/BF01389668 is OK
- 10.1007/BF01389710 is OK
- 10.1051/m2an/197307R300331 is OK
- 10.1007/BF02733251 is OK
- 10.1007/s00211-011-0394-z is OK
- 10.1007/s10208-011-9087-3 is OK
- 10.1090/S0025-5718-2013-02783-4 is OK
- 10.1007/978-3-642-23099-8_11 is OK
- 10.1145/1731022.1731030 is OK
- 10.1016/j.camwa.2009.10.027 is OK

MISSING DOIs

- None

INVALID DOIs

- None

@whedon
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whedon commented Dec 8, 2021

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@jedbrown
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jedbrown commented Dec 8, 2021

Hi @tisaac @wence-, 👋 Welcome to JOSS and thanks for agreeing to review! The comments from @whedon above outline the review process, which takes place in this thread (possibly with issues filed in the Basix repository). I'll be watching this thread if you have any questions.

The JOSS review is different from most other journals. Our goal is to work with the authors to help them meet our criteria instead of merely passing judgment on the submission. As such, the reviewers are encouraged to submit issues and pull requests on the software repository. When doing so, please mention this issue so that a link is created to this thread (and I can keep an eye on what is happening). Please also feel free to comment and ask questions on this thread. In my experience, it is better to post comments/questions/suggestions as you come across them instead of waiting until you've reviewed the entire package.

We aim for reviews to be completed within a month or so. Please let me know if you require some more time. We can also use Whedon (our bot) to set automatic reminders if you know you'll be away for a known period of time.

Please feel free to ping me (@jedbrown) if you have any questions/concerns.

@whedon
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whedon commented Dec 22, 2021

👋 @tisaac, please update us on how your review is going (this is an automated reminder).

@whedon
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whedon commented Dec 22, 2021

👋 @wence-, please update us on how your review is going (this is an automated reminder).

@wence-
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wence- commented Jan 13, 2022

Installation issues on first pass review

(Will update this issue with more comments as I proceed).

@mscroggs
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mscroggs commented Feb 2, 2022

@whedon generate pdf

@mscroggs
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mscroggs commented Feb 2, 2022

We fixed a few typos in the paper, so I'm re-generating it

@whedon
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whedon commented Feb 2, 2022

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@jedbrown
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@tisaac @wence- 👋 How are your reviews going?

@wence-
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wence- commented Mar 14, 2022

Slowly, but I have no commitments from close of play Friday, so next week?

@jedbrown
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@tisaac @wence- 👋 Please let us know how your review is going and when you might be able to continue your reviews.

@wence-
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wence- commented Apr 28, 2022

First off, many apologies to both the authors and JOSS for taking such a long time to review here. I had already taken a long time, but a break between jobs where I thought I would get this done needed to be more handsoff than I had anticipated. So I am only now getting round to cleaning the slate.

That said, here are my comments on this paper/submission.

From a software/documentation point of view, I have no real qualms. The two minor installation issues I mentioned above were swiftly fixed. One very minor thing is that the frontpage of the docs doesn't do quite a job at summarising the point of basix as the top of the README on the github project page. Replicating this information by hand is probably a bad idea but perhaps it can be incorporated programmatically in future docs builds (I don't think this is a sufficient issue to requiring fixing for the paper, but can open an issue to track it if that is normal policy).

From the paper point of view, I think that the survey of related software is a little bit weak. I agree that most finite element libraries do not separate the element library from the rest of the software (and hence there are often not publications specifically about tabulation), however, it would be useful to provide a short summary of alternate approaches and how that in basix differs. The paper does a good job contrasting with FIAT, but in many ways basix provides effectively the same style of interface as FIAT (namely tabulation of the transformation matrix at a set of points). I think it would be good to contrast with approaches in other popular libraries such as DUNE, deal, NGSolve, MFEM. As a few pointers:

I agree that you don't want to recreate too much from the longer arxiv paper, but I think the paper would be improved by a little bit of discussion here.

One thing that I think should probably be addressed is whether there is a development track towards efficient high-order finite elements that expose structure (typically tensor-product of some kind), or if this is a direction the library intends to go at all. I see there is an open issue on the interpolation part of this.

Thanks!

@tisaac
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tisaac commented Apr 29, 2022

I will finish my review by next Thursday, apologies for the delay

@tisaac
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tisaac commented May 2, 2022

@jedbrown Was my invitation revoked?

@jedbrown
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jedbrown commented May 2, 2022

Ah, you can use the new system now. Please comment with the one line command

@editorialbot generate my checklist

@tisaac
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tisaac commented May 2, 2022

Review checklist for @tisaac

Conflict of interest

  • I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the https://github.com/FEniCS/basix?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Contribution and authorship: Has the submitting author (@mscroggs) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
  • Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
  • A statement of need: Does the paper have a section titled 'Statement of Need' that clearly states what problems the software is designed to solve and who the target audience is?
  • State of the field: Do the authors describe how this software compares to other commonly-used packages?
  • Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
  • References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

@mscroggs
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mscroggs commented May 5, 2022

@wence- Thanks for your comments. We've made some changes to the paper, I'll rebuild it here once the CI has finished running and I've merged it.

One very minor thing is that the frontpage of the docs doesn't do quite a job at summarising the point of basix as the top of the README on the github project page. Replicating this information by hand is probably a bad idea but perhaps it can be incorporated programmatically in future docs builds (I don't think this is a sufficient issue to requiring fixing for the paper, but can open an issue to track it if that is normal policy).

I've made the docs builder copy this info when building the website docs (FEniCS/basix#484)

From the paper point of view, I think that the survey of related software is a little bit weak. I agree that most finite element libraries do not separate the element library from the rest of the software (and hence there are often not publications specifically about tabulation), however, it would be useful to provide a short summary of alternate approaches and how that in basix differs. The paper does a good job contrasting with FIAT, but in many ways basix provides effectively the same style of interface as FIAT (namely tabulation of the transformation matrix at a set of points). I think it would be good to contrast with approaches in other popular libraries such as DUNE, deal, NGSolve, MFEM.

Thanks for the suggested references, this was very helpful. We've added us much information as we can about other libraries based on what they've written in papers and docs (see changes in FEniCS/basix#481).

I agree that you don't want to recreate too much from the longer arxiv paper, but I think the paper would be improved by a little bit of discussion here.

We've added a little bit more to the paragraph on this (see changes in FEniCS/basix#481)

One thing that I think should probably be addressed is whether there is a development track towards efficient high-order finite elements that expose structure (typically tensor-product of some kind), or if this is a direction the library intends to go at all. I see there is an open issue on the interpolation part of this.

We've added a paragraph on this (see changes in FEniCS/basix#481)

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mscroggs commented May 5, 2022

@whedon generate pdf

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My name is now @editorialbot

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@wence-
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wence- commented May 13, 2022

@jedbrown I am happy with the current manuscript and checklist; @tisaac I think you are too?

@tisaac
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tisaac commented May 13, 2022

@wence- yep!

@jedbrown
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jedbrown commented May 18, 2022

Wonderful! I just notice one minor copy edit.

The majority of the Basix’s functionality

remove second of "the" or say "Most of Basix's functionality"

After making this change, could you:

  • Make a tagged release of your software, and list the version tag of the archived version here.
  • Archive the reviewed software in Zenodo or a similar service (e.g., figshare, an institutional repository)
  • Check the archival deposit (e.g., in Zenodo) has the correct metadata. This includes the title (should match the paper title) and author list (make sure the list is correct and people who only made a small fix are not on it). You may also add the authors' ORCID.
  • Please list the DOI of the archived version here.

I can then move forward with accepting the submission.

@mscroggs
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@wence- and @tisaac: Thanks for reviewing this!

@jedbrown. The release tag is joss (https://github.com/FEniCS/basix/releases/tag/joss). The DOI of the archive is 10.6084/m9.figshare.19794268.v1.

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@editorialbot set joss as version

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Done! version is now joss

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@editorialbot set 10.6084/m9.figshare.19794268.v1 as archive

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Done! Archive is now 10.6084/m9.figshare.19794268.v1

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@editorialbot recommend-accept

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Attempting dry run of processing paper acceptance...

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1145/1039813.1039820 is OK
- 10.11588/ans.2015.100.20553 is OK
- 10.1145/3524456 is OK
- 10.1145/2566630 is OK
- 10.1007/BF01396415 is OK
- 10.1007/BF01389668 is OK
- 10.1007/BF01389710 is OK
- 10.1051/m2an/197307R300331 is OK
- 10.1007/BF02733251 is OK
- 10.1007/s00211-011-0394-z is OK
- 10.1007/s10208-011-9087-3 is OK
- 10.1090/S0025-5718-2013-02783-4 is OK
- 10.1007/978-3-642-23099-8_11 is OK
- 10.1145/1731022.1731030 is OK
- 10.1016/j.camwa.2009.10.027 is OK
- 10.1137/19M1288723 is OK
- 10.21105/joss.03556 is OK
- 10.1007/978-3-030-59702-3_8 is OK
- 10.1145/1268776.1268779 is OK
- 10.1016/j.camwa.2020.06.009 is OK
- 10.21105/joss.02879 is OK
- 10.1145/2590830 is OK

MISSING DOIs

- None

INVALID DOIs

- None

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⚠️ Error prepararing paper acceptance. The generated XML metadata file is invalid.

Element doi: [facet 'pattern'] The value  is not accepted by the pattern '10\.[0-9]{4,9}/.{1,200}'.

@mscroggs
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Looks like one of the references in the paper has an extra set of curly braces around the DOI, which is causing an issue. FEniCS/basix#511 will hopefully fix this

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Thanks for diagnosing.

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mscroggs commented May 19, 2022

@jedbrown Correction is merged so it should be ready for another attempt now

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@editorialbot recommend-accept

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Attempting dry run of processing paper acceptance...

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1145/1039813.1039820 is OK
- 10.11588/ans.2015.100.20553 is OK
- 10.1145/3524456 is OK
- 10.1145/2566630 is OK
- 10.1007/BF01396415 is OK
- 10.1007/BF01389668 is OK
- 10.1007/BF01389710 is OK
- 10.1051/m2an/197307R300331 is OK
- 10.1007/BF02733251 is OK
- 10.1007/s00211-011-0394-z is OK
- 10.1007/s10208-011-9087-3 is OK
- 10.1090/S0025-5718-2013-02783-4 is OK
- 10.1007/978-3-642-23099-8_11 is OK
- 10.1145/1731022.1731030 is OK
- 10.1016/j.camwa.2009.10.027 is OK
- 10.1137/19M1288723 is OK
- 10.21105/joss.03556 is OK
- 10.1007/978-3-030-59702-3_8 is OK
- 10.1145/1268776.1268779 is OK
- 10.1016/j.camwa.2020.06.009 is OK
- 10.21105/joss.02879 is OK
- 10.1145/2590830 is OK

MISSING DOIs

- None

INVALID DOIs

- None

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👋 @openjournals/joss-eics, this paper is ready to be accepted and published.

Check final proof 👉 openjournals/joss-papers#3223

If the paper PDF and the deposit XML files look good in openjournals/joss-papers#3223, then you can now move forward with accepting the submission by compiling again with the command @editorialbot accept

@editorialbot editorialbot added the recommend-accept Papers recommended for acceptance in JOSS. label May 19, 2022
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arfon commented May 25, 2022

@editorialbot accept

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Doing it live! Attempting automated processing of paper acceptance...

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🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

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🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

  1. Check final PDF and Crossref metadata that was deposited 👉 Creating pull request for 10.21105.joss.03982 joss-papers#3229
  2. Wait a couple of minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.03982
  3. If everything looks good, then close this review issue.
  4. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

@editorialbot editorialbot added accepted published Papers published in JOSS labels May 25, 2022
@arfon
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arfon commented May 25, 2022

@tisaac, @wence- – many thanks for your reviews here and to @jedbrown for editing this submission! JOSS relies upon the volunteer effort of people like you and we simply wouldn't be able to do this without you ✨

@mscroggs – your paper is now accepted and published in JOSS ⚡🚀💥

@arfon arfon closed this as completed May 25, 2022
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🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
[![DOI](https://joss.theoj.org/papers/10.21105/joss.03982/status.svg)](https://doi.org/10.21105/joss.03982)

HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.03982">
  <img src="https://joss.theoj.org/papers/10.21105/joss.03982/status.svg" alt="DOI badge" >
</a>

reStructuredText:
.. image:: https://joss.theoj.org/papers/10.21105/joss.03982/status.svg
   :target: https://doi.org/10.21105/joss.03982

This is how it will look in your documentation:

DOI

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