[PRE REVIEW]: sleev: An R Package for Semiparametric Likelihood Estimation with Errors in Variables

[editorialbot]

Submitting author: @JiangmeiRubyXiong (Jiangmei Xiong)
Repository: https://github.com/dragontaoran/sleev
Branch with paper.md (empty if default branch):
Version: v1.0.3
Editor: @jbytecode
Reviewers: Pending
Managing EiC: Chris Vernon

Status

Status badge code:

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Markdown: [![status](https://joss.theoj.org/papers/2dc012ed16ca93ac2f265dc6725f1466/status.svg)](https://joss.theoj.org/papers/2dc012ed16ca93ac2f265dc6725f1466)

Author instructions

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.03 s (1577.3 files/s, 254582.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               30            524           1164           2131
C++                              5            252            360           1379
Markdown                         2             80              0            369
TeX                              1              0              0             65
C/C++ Header                     1             19             67             22
YAML                             1              1              4             19
-------------------------------------------------------------------------------
SUM:                            40            876           1595           3985
-------------------------------------------------------------------------------

Commit count by author:

   112	Joey Sherrill
    26	Sarah Lotspeich
     6	JiangmeiRubyXiong
     5	Sarah
     3	Ran Tao
     3	Sarah Lotspeich (She/Her)
     2	Ruby XIONG
     2	dragontaoran
     1	Shawn Garbett

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 2157

✅ The paper includes a Statement of need section

[editorialbot]

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: An empirical study for impacts of measurement erro...
- No DOI given, and none found for title: Efficient odds ratio estimation under two-phase sa...
- No DOI given, and none found for title: Spline functions: basic theory
- No DOI given, and none found for title: On profile likelihood

❌ MISSING DOIs

- 10.1002/sim.8799 may be a valid DOI for title: Efficient semiparametric inference for two-phase s...
- 10.1080/01621459.2017.1295864 may be a valid DOI for title: Efficient semiparametric inference under two-phase...
- 10.1214/20-aoas1343 may be a valid DOI for title: Accounting for dependent errors in predictors and ...

❌ INVALID DOIs

- None

[editorialbot]

⚠️ An error happened when generating the pdf. Author (Jiangmei Xiong) is missing affiliation.

[JiangmeiRubyXiong]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Five most similar historical JOSS papers:

enetLTS: Robust and Sparse Methods for High Dimensional Linear, Binary, and Multinomial Regression
Submitting author: @fskurnaz
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Reviewers: @mcavs, @marastadler
Similarity score: 0.6579

robustHD: An R package for robust regression with high-dimensional data
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Handling editor: @mikldk (Retired)
Reviewers: @valentint, @msalibian
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Submitting author: @alemermartinez
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serp: An R package for smoothing in ordinal regression
Submitting author: @ejikeugba
Handling editor: @Bisaloo (Retired)
Reviewers: @bernardsilenou, @wesleyburr
Similarity score: 0.6439

cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R
Submitting author: @PhilBoileau
Handling editor: @fboehm (Active)
Reviewers: @Marie-PerrotDockes, @yunanwu123
Similarity score: 0.6391

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[JiangmeiRubyXiong]

⚠️ An error happened when generating the pdf. Author (Jiangmei Xiong) is missing affiliation.

Affiliation updated and issue resolved.

[JiangmeiRubyXiong]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: An empirical study for impacts of measurement erro...
- No DOI given, and none found for title: Efficient odds ratio estimation under two-phase sa...
- No DOI given, and none found for title: Spline functions: basic theory
- No DOI given, and none found for title: On profile likelihood

❌ MISSING DOIs

- 10.1002/sim.8799 may be a valid DOI for title: Efficient semiparametric inference for two-phase s...
- 10.1080/01621459.2017.1295864 may be a valid DOI for title: Efficient semiparametric inference under two-phase...
- 10.1214/20-aoas1343 may be a valid DOI for title: Accounting for dependent errors in predictors and ...

❌ INVALID DOIs

- None

DOIs are now added to the paper.bib

[crvernon]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Five most similar historical JOSS papers:

enetLTS: Robust and Sparse Methods for High Dimensional Linear, Binary, and Multinomial Regression
Submitting author: @fskurnaz
Handling editor: @fabian-s (Active)
Reviewers: @mcavs, @marastadler
Similarity score: 0.6579

robustHD: An R package for robust regression with high-dimensional data
Submitting author: @aalfons
Handling editor: @mikldk (Retired)
Reviewers: @valentint, @msalibian
Similarity score: 0.6549

RBF: An R package to compute a robust backfitting estimator for additive models
Submitting author: @alemermartinez
Handling editor: @mikldk (Retired)
Reviewers: @mcavs, @mmrabe
Similarity score: 0.6487

serp: An R package for smoothing in ordinal regression
Submitting author: @ejikeugba
Handling editor: @Bisaloo (Retired)
Reviewers: @bernardsilenou, @wesleyburr
Similarity score: 0.6442

cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R
Submitting author: @PhilBoileau
Handling editor: @fboehm (Active)
Reviewers: @Marie-PerrotDockes, @yunanwu123
Similarity score: 0.6389

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[crvernon]

@editorialbot invite @jbytecode as editor

👋 @jbytecode can you take on this submission as editor?

[editorialbot]

Invitation to edit this submission sent!

[jbytecode]

@editorialbot set me as editor

@crvernon - sure, gladly. thank you for inviting me!

[editorialbot]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

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[jbytecode]

@editorialbot assign me as editor

[editorialbot]

Assigned! @jbytecode is now the editor

[jbytecode]

@JiangmeiRubyXiong - Hi, thank you for submitting your manuscript and software to JOSS. I am the handling editor of this submission.

While I study your work and try to find a list of suitable reviewers, please take a look at the issue below:

In the manuscript the citations (@tao2021efficient; @lotspeich2022efficient) look a little bit awkward. Could you please read the documentations

• https://joss.readthedocs.io/en/latest/paper.html#citations
• https://pandoc.org/MANUAL#extension-citations

and correct the citation style of your citations in your paper?

Thank you in advance.

[jbytecode]

@JiangmeiRubyXiong - The other missing thing in the manuscript is the DOIs handles of the authors. Please add the ORCIDs in the metadata of the manuscript markdown. When you are done with the task, please ping me. Thank you in advance.