diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..3f5b3dc --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,12 @@ +# Base images + +Initial release containing the following base images: + +* `ghcr.io/openpipelines-bio/base/python_3_10:1.0.0`, a Python 3.10 slim image with the following extra packages preinstalled: + - Apt: `procps` + - Python: `anndata~=0.8.0`, `mudata~=0.2.0`, `scanpy~=1.9.2` + +* `ghcr.io/openpipelines-bio/base/r2u_22_04:1.0.0`, an R2U 22.04 image with the following extra packages preinstalled: + - Apt: `python3` and `procps` + - Python: `anndata~=0.8.0`, `mudata~=0.2.0`, `scanpy~=1.9.2` + - R: `anndata` \ No newline at end of file diff --git a/README.md b/README.md index a20234f..cea9383 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,8 @@ # Base images -Repository for docker images for openpipelines-bio. \ No newline at end of file +Repository for base Docker images for openpipelines-bio. + +This repository currently contains the following images: + +* [`ghcr.io/openpipelines-bio/base/python_3_10`](src/python_3_10), a Python 3.10 slim image with anndata and mudata preinstalled. +* [`ghcr.io/openpipelines-bio/base/r2u_22_04`](src/r2u_22_04), an R2U 22.04 image with Python, anndata and mudata preinstalled. \ No newline at end of file diff --git a/src/python_3_10/CHANGELOG.md b/src/python_3_10/CHANGELOG.md deleted file mode 100644 index 6218ae6..0000000 --- a/src/python_3_10/CHANGELOG.md +++ /dev/null @@ -1,6 +0,0 @@ -# `ghcr.io/openpipelines-bio/base/python_3_10:1.0.0` - -* Initial release. An Python 3.10 image with the following packages installed: - - `anndata~=0.8.0` - - `pyyaml` - - `requests` \ No newline at end of file diff --git a/src/r2u_22_04/CHANGELOG.md b/src/r2u_22_04/CHANGELOG.md deleted file mode 100644 index 315c09c..0000000 --- a/src/r2u_22_04/CHANGELOG.md +++ /dev/null @@ -1,11 +0,0 @@ -# `ghcr.io/openpipelines-bio/base/r2u_22_04:1.0.0` - -* Initial release. An R2U 22.04 image with the following packages installed: - - R release - - R packages: remotes, anndata and BiocManager - - Python 3.10 - - Python packages: - * `anndata~=0.8.0` - * `mudata~=0.2.0` - * `scanpy~=1.9.2` - - Apt packages: procps \ No newline at end of file