From 39551968bfb4c7d5b1a2619efa8808fd292ec2d2 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Wed, 4 Sep 2024 06:49:34 +0200
Subject: [PATCH] fix scib kbet by pinning scipy to <= 1.13 (see
 theislab/scib#412)

---
 src/tasks/batch_integration/metrics/kbet/config.vsh.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml b/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml
index 17af9dc1a4..aca556a8fc 100644
--- a/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml
+++ b/src/tasks/batch_integration/metrics/kbet/config.vsh.yaml
@@ -51,6 +51,7 @@ platforms:
           - scib==1.1.5
           - rpy2>=3
           - anndata2ri
+          - scipy<=1.13
   - type: nextflow
     directives: 
       label: [midtime, midmem, lowcpu]