mrtarget.ops.yml

#default ops configuration 

#this is read by ConfigArgParse
#it uses a sub-set of YAML
#for details see https://pypi.org/project/ConfigArgParse/
#this can be specified with --ops-config on the command line
#or with OPS_CONFIG environment variable


#location to read the data configuration from
# see the technical release notes for the location of this file for each release
#data-config: 

#location to read the elasticsearch configuration from
# see the technical release notes for the location of this file for each release
#es-config: 

#python logging file location
#log-config: mrtarget/resources/logging.ini


#elasticsearch data prefix
#release-tag: master

#QC related
#note, not complete

#location to write a tab separated qc summary
#qc-out:

#locaton to read a tab separated qc summary
#difference from will be added to output
#qc-in:

#only run the qc for each stage, don't change the data
#qc-only: false

#skip running the qc
#skip-qc: false

#location of the elasticsearch nodes
#multiple values can be specified as a list for use with a cluster
#elasticseach-nodes: ["localhost:9200"]

#number of processess to use for validating evidence
#val-workers-validator: 4
#number of processess to use for writing evidence
#val-workers-writer: 4
#size of queue between validators and writers
#val-queue-validator-writer: 1000

#number of processess to use for producing association pairs
#as-workers-production: 4
#number of processess to use for scoring assocation pairs
#as-workers-score: 4
#size of queue between producers and scorers
#as-queue-production-score: 1000

#number of processess to use for producing relationship pairs
#ddr-workers-production: 4
#number of processess to use for scoring relationship pairs
#ddr-workers-score: 4
#number of threads to use for writing to elasticsearch
#ddr-workers-write: 8
#size of queue between producers and scorers
#ddr-queue-production-score: 1000
#size of queue between scorers and result
#ddr-queue-score-result: 1000
#size of queue to writers
#note this is in number of chunks of 1000 documents
#ddr-queue-write: 8


#path to read gene plugins from
#gen-plugin-places: [mrtarget/plugins/gene]