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@BaroudLab Physical Microfluidics and Bioengineering, Institut Pasteur

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    16 repositories

    • Stem-Cell-Organoid-Chip-Design

      Public
      3D Printable mechanical drawings for the droplet chip used for the culture of stem cell derived organoids
      0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • MechanoChip

      Public
      Design of micro-device for mechano-biology
      MIT License
      •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • anchor-droplet-chip

      Public
      Analyse achored droplets data
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Dec 4, 2024Dec 4, 2024

    • zarr-tools

      Public
      Convert nd2 to zarr
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Feb 9, 2024Feb 9, 2024

    • APC-mutation-T-cells

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • stl

      Public
      Collection of 3D designs for 3D printing
      MIT License
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • Pyxidis

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Oct 26, 2023Oct 26, 2023

    • vizarr

      Public
      A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
      TypeScript
      •
      MIT License
      •18•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • napari-griottes

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Apr 14, 2023Apr 14, 2023

    • Griottes

      Public
      Python program to generate NetworkX graphs from segmented images.
      Jupyter Notebook
      •
      MIT License
      •4•15•0•0•Updated Apr 14, 2023Apr 14, 2023

    • imreg_dft_aa

      Public
      Image registration using discrete Fourier transform.
      Python
      •
      Other
      •68•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • screening-spheoroids-analysis

      Public
      Code associated with the article by R. Fèvre et al.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 2, 2022Dec 2, 2022

    • Griottes_paper

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 21, 2022Mar 21, 2022

    • CTL_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • CTL_tracking_in_droplets

      Public
      Python
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • tutorials

      Public
      0•0•0•0•Updated Feb 22, 2022Feb 22, 2022