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visiumStitched
PublicR package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.jhpce_module_source
PublicqsvaR
PublicQuality Surrogate Variable Analysis for Degradation Correctionls_molecular-profiling
Publicjhpce_module_config
Publicspatial_DG_lifespan
Publicslurmjobs
Publicglobus
Publicspatial_hpc
Publicsmoking-nicotine-mouse
PublicvisiumStitched_brain
PublicExample human brain data used for https://research.libd.org/visiumStitched/.ANCR
PublicgoesHyde_mdd_rnaseq
PublicDeconvoBuddies
PublicHelper Functions for LIBD Deconvolutionbdportal
PublicDLPFC_snRNAseq
PublicsnRNA_seq portion of the spatialDLPFC projectzandiHyde_bipolar_rnaseq
Publicdeconvo_lute-paper
PublicContains analysis for the lute software papersmokingMouse
PublicspatialLIBD
PublicCode for the spatialLIBD R/Bioconductor package and shiny appdRFEtools
PublicHabenula_Pilot
PublichabenulaPilot project code repositorytemplate_project
Public templateTemplate project following the guidelines from https://lcolladotor.github.io/bioc_team_ds/organizing-your-work.html#.YzL43uzMKX0HumanPilot
PublicspatialDLPFC
PublicspatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samplesrecountWorkflow
Publicsex_differences_sz
PublicVisium_SPG_AD
PublicVisium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.