Repositories list

• rocker-ultra

  Public
  Containerised RStudio with bells+whistles for HPC and everywhere

  Dockerfile

  •

  GNU General Public License v2.0

  •2•4•5•1•Updated Feb 26, 2025Feb 26, 2025

• polyApipe

  Public
  polyApipe

  R

  •

  GNU Lesser General Public License v2.1

  •6•13•5•0•Updated Feb 10, 2025Feb 10, 2025

• laxy

  Public
  Laxy Genomics Pipelines

  Python

  •

  Apache License 2.0

  •1•3•69•0•Updated Jan 24, 2025Jan 24, 2025

• varistran

  Public
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data

  R

  •

  GNU Lesser General Public License v2.1

  •3•20•0•0•Updated Jan 23, 2025Jan 23, 2025

• laxyapi-r

  Public
  Interace with the Laxy REST API in R. Download your job files.

  R

  •

  MIT License

  •0•2•0•0•Updated Dec 13, 2024Dec 13, 2024

• r-intro-resbazvic2024

  Public
  Introduction to R workshop material for ResBaz Victoria 2024

  rworkshop

  R

  •14•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• Functional_Enrichment_BioCommons_2024

  Public
  Materials and resources for a 2-day workshop on functional enrichment analysis, organised by Australian BioCommons and delivered by Monash University and the University of Sydney.

  HTML

  •1•2•0•0•Updated Nov 21, 2024Nov 21, 2024

• RNAseq_workshop_2024

  Public
  HTML

  •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

• VEPvcf_parser

  Public
  R

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• scRNAseq_Workshop_ABACBS_2024

  Public
  Single cell RNAseq workshop for ABACBS 2024

  HTML

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• learning-resource-links

  Public
  An awesome list of learning resources for bioinformatics, genomics and computational biology

  4•13•0•0•Updated Oct 9, 2024Oct 9, 2024

• provean

  Public archive
  Fork of Provean tool from : http://provean.jcvi.org

  C++

  •

  Other

  •1•6•0•0•Updated Aug 13, 2024Aug 13, 2024

• LFQ-Analyst

  Public
  The repo for LFQ-Analyst

  statistical-analysisproteomicsmass-spectrometry+ 1shinydashboard

  HTML

  •

  GNU General Public License v3.0

  •13•29•6•0•Updated Aug 7, 2024Aug 7, 2024

• containers

  Public
  A repository for all our tool Dockerfiles

  Dockerfile

  •

  MIT License

  •0•0•1•0•Updated Jul 12, 2024Jul 12, 2024

• Nov2023_scRNAseq_workshop

  Public
  HTML

  •2•0•1•0•Updated May 5, 2024May 5, 2024

• bio-ansible

  Public
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server

  ansiblebioinformatics

  Jinja

  •

  Apache License 2.0

  •16•23•1•0•Updated May 2, 2024May 2, 2024

• enrichment_analysis_workshop_2024

  Public
  A base for enrichment analysis workshop material

  HTML

  •1•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• enrichment_analysis_workshop

  Public
  A base for enrichment analysis workshop material

  HTML

  •1•2•1•0•Updated Mar 15, 2024Mar 15, 2024

• RNAsik-pipe

  Public
  RNAsik - more than just a pipeline

  TeX

  •

  Apache License 2.0

  •5•13•25•1•Updated Feb 6, 2024Feb 6, 2024

• PBMC-Single-Cell-Workshop-2022

  Public
  This workshop, conducted by the Monash Bioinformatics Platform, will cover the Seurat 3K PBMC tutorial with an extended section on how to use third party tools SingleR and Harmony

  R

  •

  GNU General Public License v3.0

  •1•0•5•0•Updated Nov 15, 2023Nov 15, 2023

• sc-hyp-org

  Public
  This repository contains detailed code for the analysis of scRNAseq data

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

• R-ShinyIntro-MBP

  Public
  https://monashbioinformaticsplatform.github.io/R-ShinyIntro-MBP/

  HTML

  •5•2•1•0•Updated Jul 4, 2023Jul 4, 2023

• slurry

  Public
  A web accessible tool for looking at a Slurm queue and the associated priorities

  Vue

  •0•3•1•27•Updated Jan 4, 2023Jan 4, 2023

• alphafold

  Public
  Open source code for AlphaFold

  Python

  •

  Apache License 2.0

  •2.3k•0•0•0•Updated Aug 26, 2022Aug 26, 2022

• crispr_results

  Public
  Crispr report post alignment + freebayes, quality/depth thresholding

  HTML

  •1•0•0•4•Updated Jun 21, 2022Jun 21, 2022

• r-more

  Public
  Further topics in R.

  HTML

  •3•7•0•0•Updated Jun 1, 2022Jun 1, 2022

• Green_sea_turtle_RNA-Seq

  Public
  ORA and GSEA analysis of Green sea turtle embryo RNA-Seq

  0•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• Depmap

  Public
  Benjamin's Depmap code

  HTML

  •0•0•0•0•Updated Apr 5, 2022Apr 5, 2022

• Single-Cell-Workshop

  Public
  Half day workshop with 10x

  R

  •

  GNU General Public License v3.0

  •1•1•4•0•Updated Mar 1, 2022Mar 1, 2022

• data-carpentry-genomics-ansible

  Public
  An Ansible playbook for setting up Data Carpentry Genomics instances.

  Apache License 2.0

  •1•0•1•0•Updated Jan 25, 2022Jan 25, 2022