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    36 repositories

    • CommonsShare_AppStore

      Public
      CSS
      •0•0•0•9•Updated Dec 8, 2022Dec 8, 2022

    • TOPMed_RNAseq_CWL

      Public
      TOPMed RNA-seq CWL Workflow developed for Helium DataCommons
      Common Workflow Language
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•1•1•Updated Jun 3, 2020Jun 3, 2020

    • commonsshare

      Public
      CommonsShare is Helium Team's Web User Interface that explores using the cloud to access and share FAIR Biomedical big data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Apr 15, 2020Apr 15, 2020

    • auth_microservice

      Public
      Microservice which abstracts out OAuth2/OpenID exchanges and token management from applications
      Python
      •5•4•20•2•Updated Sep 9, 2019Sep 9, 2019

    • django_irods

      Public
      iRODS connector for Django / Celery
      Python
      •
      Other
      •2•0•0•0•Updated Apr 22, 2019Apr 22, 2019

    • pivot-scheduling

      Public
      PIVOT simulator for research in scheduling algorithms in cross-cloud, geo-distributed environments
      Python
      •2•4•1•0•Updated Mar 1, 2019Mar 1, 2019

    • PIVOT

      Public
      Python
      •0•0•14•0•Updated Jan 26, 2019Jan 26, 2019

    • data-commons-workspace

      Public
      Shell
      •1•2•5•0•Updated Jan 25, 2019Jan 25, 2019

    • topmed-workflows

      Public
      a place for topmed workflows
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •23•0•0•0•Updated Jan 8, 2019Jan 8, 2019

    • workflow-service

      Public
      Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
      Python
      •
      Apache License 2.0
      •21•0•0•0•Updated Jan 4, 2019Jan 4, 2019

    • irods_client_icommands

      Public
      C++
      •31•0•0•0•Updated Dec 12, 2018Dec 12, 2018

    • pivot-data

      Public
      Data management in PIVOT
      Jupyter Notebook
      •0•0•0•0•Updated Dec 1, 2018Dec 1, 2018

    • data-transfer-project

      Public
      The Data Transfer Project makes it easy for people to transfer their data between online service providers. We are establishing a common framework, including data models and protocols, to enable direct transfer of data both into and out of participating online service providers.
      Java
      •
      Apache License 2.0
      •482•0•0•0•Updated Nov 30, 2018Nov 30, 2018

    • UserCommons

      Public
      A collection of user-based workflows, workspaces, needs and wishes for Helium
      0•0•0•0•Updated Nov 7, 2018Nov 7, 2018

    • cwl_workflows

      Public
      Public Helium CWL Workflows
      Common Workflow Language
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

    • documents

      Public
      Helium Team Documents
      0•2•0•0•Updated Oct 12, 2018Oct 12, 2018

    • irods_resource_plugin_s3

      Public
      Amazon Simple Storage Service (S3) resource plugin for iRODS
      C++
      •
      Other
      •16•0•0•0•Updated Oct 10, 2018Oct 10, 2018

    • hail-helium

      Public
      Python
      •0•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • docker-images

      Public
      This repository stores Dockerfiles and samples to build Docker images for hms-dbmi projects.
      Groovy
      •4•0•2•0•Updated Sep 27, 2018Sep 27, 2018

    • toil

      Public
      A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
      Python
      •
      Apache License 2.0
      •241•0•0•0•Updated Sep 12, 2018Sep 12, 2018

    • pm_reporting_howto

      Public
      0•2•0•0•Updated Jul 31, 2018Jul 31, 2018

    • Fractalis

      Public
      [Back-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 31, 2018Jul 31, 2018

    • irods-audit-plugin-message-broker

      Public
      Python
      •1•1•3•0•Updated Jul 25, 2018Jul 25, 2018

    • IRODS_DEPLOY

      Public
      1•0•0•0•Updated Jul 23, 2018Jul 23, 2018

    • docker-splunk

      Public
      Docker Splunk Enterprise image
      Shell
      •
      Apache License 2.0
      •262•0•0•0•Updated Jul 17, 2018Jul 17, 2018

    • schema_salad

      Public
      Semantic Annotations for Linked Avro Data
      Python
      •
      Apache License 2.0
      •62•0•0•0•Updated Jul 16, 2018Jul 16, 2018

    • network-aware-irods-api

      Public
      Network Aware iRODS API
      Python
      •1•0•0•0•Updated Jul 2, 2018Jul 2, 2018

    • irods-packages

      Public
      for storing packages for iRODS builds not available in the iRODS official repos
      Shell
      •0•0•0•0•Updated Jun 26, 2018Jun 26, 2018

    • docker-gen

      Public
      Generate files from docker container meta-data
      Go
      •
      MIT License
      •603•0•0•0•Updated May 30, 2018May 30, 2018

    • irods-ga4gh-dos

      Public
      GA4GH Data Object Service for iRODS
      Java
      •
      Other
      •3•0•0•0•Updated Mar 27, 2018Mar 27, 2018