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    124 repositories

    • 2025-ggg-201b-hw1-CarlosEsperanza

      Public
      2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1 created by GitHub Classroom
      Python
      •5•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • 2025-ggg-201b-hw1-br-allen

      Public
      2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1 created by GitHub Classroom
      Python
      •5•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • 2025-ggg-201b-hw1-dli10

      Public
      2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1 created by GitHub Classroom
      Python
      •5•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • 2025-ggg-201b-hw1-FlorenciaCasale

      Public
      2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1 created by GitHub Classroom
      Python
      •5•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • 2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1

      Public
      2025-ggg-201b-2025-ggg-201b-hw1-2025-ggg-201b-hw1 created by GitHub Classroom
      Python
      •5•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • 2025-ggg-201b-hw1

      Public template
      Python
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • 2024-ggg-201b-lab

      Public
      0•1•0•0•Updated Jan 17, 2025Jan 17, 2025

    • 2025-ggg-201b-variant-calling

      Public
      Python
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • 2025-ucd-dinkum

      Public
      2025 UC Davis Intro to Gene Regulatory Networks
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•2•0•0•Updated Jan 15, 2025Jan 15, 2025

    • 2025-ggg-201b-lab

      Public
      Materials for UC Davis GGG 201(b) class - lab section
      0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • 2024-hpc-sourmash-example

      Public
      Shell
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • 2024-gern-dinkum

      Public
      Notebooks for MBL GERN 2024
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•2•0•4•Updated Oct 18, 2024Oct 18, 2024

    • 2024-gern-briscoe-model

      Public
      James Briscoe notebooks for MBL GERN 2024 - dynamical systems view of gene regulatory networks
      Jupyter Notebook
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • monty-hall

      Public
      Using Jupyter Notebooks to implement a Monte Carlo approach to the Monty Hall problem
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•2•1•Updated Oct 6, 2024Oct 6, 2024

    • 2024-ggg-201b-rnaseq

      Public
      RNAseq stuff for 201b
      HTML
      •0•1•0•0•Updated Sep 27, 2024Sep 27, 2024

    • 2024-pig-paradigm-workshop

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Apr 29, 2024Apr 29, 2024

    • 2024-GGG298

      Public
      Class materials for GGG 298, Tools for Data Intensive Research, WQ 2024 @ UC Davis.
      R
      •0•2•0•0•Updated Mar 13, 2024Mar 13, 2024

    • 2024-ggg-201b-hw1-slvanburen

      Public
      2024-ggg-201b-hw1-slvanburen created by GitHub Classroom
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Feb 19, 2024Feb 19, 2024

    • 2024-ggg-201b-assembly

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • 2024-ggg-201b-hw1

      Public template
      HW #1 - variant calling
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • 2024-ggg-201b-variant-calling

      Public
      Python
      •0•1•0•0•Updated Jan 26, 2024Jan 26, 2024

    • 2024-ggg-201b-hw0

      Public template
      0•0•0•0•Updated Jan 15, 2024Jan 15, 2024

    • 2023-snakemake-book-draft

      Public
      A DRAFT, early stage book on snakemake.
      Python
      •0•18•22•1•Updated Nov 1, 2023Nov 1, 2023

    • 2023-rnaseq

      Public
      0•1•0•0•Updated Oct 4, 2023Oct 4, 2023

    • 2020-ggg-201b-rnaseq

      Public
      HTML
      •9•4•0•0•Updated Oct 4, 2023Oct 4, 2023

    • 2023-june-datalab-collaboratory

      Public
      Workshop schedule & ancillary information for June 2023 DataLab Collaboratory
      Creative Commons Zero v1.0 Universal
      •0•4•8•0•Updated Jun 25, 2023Jun 25, 2023

    • shared-conda-on-farm

      Public
      Scripts and config for setting up a shared conda package space on farm.cse.ucdavis.edu
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•2•0•Updated Apr 17, 2023Apr 17, 2023

    • 2023-ggg-201b-lab

      Public
      0•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • 2023-GGG298

      Public
      Class materials for GGG 298, Tools for Data Intensive Research, WQ 2023 UC Davis.
      1•3•0•0•Updated Mar 15, 2023Mar 15, 2023

    • 2023-ggg298-sourmash-compare

      Public
      A simple example snakemake workflow
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •23•1•1•0•Updated Mar 15, 2023Mar 15, 2023