Open Problems in Single-Cell Analysis

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30 packages

base_python
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

85.2k
base_r
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

24.7k
h5ad/extract_uns_metadata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

6.98k
schema/verify_data_structure
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

1.06k
metrics/regression_1
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

934
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

836
metrics/distance_correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

600
common/extract_metadata
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

587
metrics/coranking
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

567
metrics/density_preservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

560
metrics/trustworthiness
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

502
metrics/clustering_performance
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

484
metrics/poisson
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

478
metrics/mse
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

451
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

432
robustness_analysis/noise_grn
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

400
metrics/ks_statistic_sc_features
Published Aug 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

371
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

340
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

339
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

335
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

324
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

322
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

322
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

322
metrics/accuracy
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

318
metrics/ks_statistic_gene_cell
Published Jul 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

315
metrics/f1
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

310
metrics/ks_statistic_spatial
Published Aug 6, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

305
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

300
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

296