Open Problems in Single-Cell Analysis

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30 packages

methods_segmentation/custom
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_transcript_assignment/basic
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods/mnn_correct
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

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methods/fastmnn
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

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explanatory_analysis
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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data_loaders/download_10x_xenium
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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cell_volume_methods/alpha_shapes
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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expr_correction_methods/gene_efficiency_correction
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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normalisation_methods/normalise_by_volume
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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data_processors/crop_region
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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assignment_methods/basic
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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segmentation_methods/custom
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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data_processors/subset_reference
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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segmentation_methods/example
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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data_loaders/download_allen_brain_cell_atlas
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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celltype_annotation_methods/ssam
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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count_aggregation/basic
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/singlecell_broadinstitute
Published Sep 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cell_cell_communication

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data_processors/process_dataset
Published Sep 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cell_cell_communication

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data_processors/infer_truth
Published Sep 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cell_cell_communication

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spatially_variable_genes/metrics/correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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dimensionality_reduction/methods/densmap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/transformers/embed_to_graph
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/control_methods/random_integration/celltype_graph
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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common/create_component
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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spatially_variable_genes/methods/spark_x
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/methods/bbknn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/control_methods/random_integration/batch_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/metrics/cell_cycle_conservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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batch_integration/metrics/asw_batch
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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