Open Problems in Single-Cell Analysis

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30 packages

process_datasets/generate_sim_spatialcluster
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

270
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

258
data_processors/process_dataset
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

229
metrics/r2
Published Jul 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_decomposition

211
methods/simlr
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

179
methods/alra
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

176
methods/dca
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

175
methods/knn_smoothing
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

171
methods/magic
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

164
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

148
control_methods/perfect_denoising
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

132
methods/diffusion_map
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

130
control_methods/no_denoising
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

125
metrics/mse
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

114
metrics/correlation
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

111
datasets/normalization/log_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

104
control_methods/positive_control
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

96
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

85
methods/scdesign3
Published Jul 9, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

83
methods/symsim
Published Jul 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

81
robustness_analysis/causal_grn
Published Sep 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

77
methods/scdesign2
Published Jul 10, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

77
methods/srtsim
Published Jul 10, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

76
methods/splatter
Published Jul 10, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

75
methods/zinbwave
Published Jul 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

75
control_methods/negative
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

73
methods/sparsim
Published Jul 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

71
control_methods/positive
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

71
methods/umap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
control_methods/spectral_features
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65