Open Problems in Single-Cell Analysis

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30 packages

common/extract_metadata
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/extract_metadata

587
datasets/normalization/log_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_cp

104
common/check_dataset_schema
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/check_dataset_schema

39
datasets/processors/hvg
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/hvg

8
datasets/processors/knn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/knn

8
datasets/processors/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/pca

8
common/process_task_results/get_results
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_results

4
common/process_task_results/get_metric_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_metric_info

4
common/process_task_results/get_method_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_method_info

4
common/process_task_results/get_dataset_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_dataset_info

4
common/process_task_results/generate_qc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/generate_qc

4
common/process_task_results/get_task_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_task_info

4
datasets/processors/subsample
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/subsample

4
batch_integration/methods/scalex_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scalex_feature

4
datasets/normalization/atac_tfidf
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/atac_tfidf

3
datasets/processors/svd
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/svd

3
datasets/normalization/l1_sqrt
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/l1_sqrt

3
datasets/normalization/prot_clr
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/prot_clr

3
datasets/normalization/log_scran_pooling
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_scran_pooling

3
datasets/normalization/sqrt_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/sqrt_cp

3
spatially_variable_genes/metrics/correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/metrics/correlation

0
dimensionality_reduction/methods/densmap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/densmap

0
batch_integration/transformers/embed_to_graph
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/transformers/embed_to_graph

0
batch_integration/control_methods/random_integration/celltype_graph
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/random_integration/celltype_graph

0
common/create_component
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/create_component

0
spatially_variable_genes/methods/spark_x
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spark_x

0
batch_integration/methods/bbknn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/bbknn

0
batch_integration/control_methods/random_integration/batch_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/random_integration/batch_feature

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batch_integration/metrics/cell_cycle_conservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/cell_cycle_conservation

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batch_integration/metrics/asw_batch
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/asw_batch

0