Repositories list

• phenopacket-schema

  Public
  Repository for the GA4GH phenopacket schema

  schemaprotobufga4gh+ 4phenotypesmonarchinitiativephenopacketsehr-phenotyping

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •30•78•43•8•Updated Sep 19, 2024Sep 19, 2024

• hapi-pheno

  Public
  FHIR Client for working with phenopackets

  Java

  •

  GNU General Public License v3.0

  •0•3•3•0•Updated Mar 14, 2024Mar 14, 2024

• phenopackets.github.io

  Public
  phenopackets.org website

  HTML

  •2•1•4•0•Updated Mar 7, 2024Mar 7, 2024

• phenopacket-tools

  Public
  An app and library for building, conversion, and validation of GA4GH Phenopackets.

  cliga4ghphenopackets

  Java

  •

  GNU General Public License v3.0

  •5•13•7•0•Updated Sep 22, 2023Sep 22, 2023

• phenotron

  Public
  The newest prime of the transformers for phenopackets

  Python

  •0•3•1•0•Updated Aug 10, 2023Aug 10, 2023

• hapi-pheno-server

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• hapi-pheno-server-setup

  Public
  Python

  •2•0•0•0•Updated Jun 12, 2023Jun 12, 2023

• vulcan

  Public
  For Phenopackets Vulcan use case related work

  HTML

  •1•0•10•1•Updated Jan 26, 2023Jan 26, 2023

• phenopacket-validator

  Public archive
  Library and tools to help validate phenopackets

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•5•2•Updated Jan 6, 2022Jan 6, 2022

• OMOP2Phenopacket

  Public
  R

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•0•0•Updated Nov 17, 2021Nov 17, 2021

• omop-exporter

  Public
  Export Phenopackets from OMOP

  omopphenopacketsphenopacket+ 1omop-cdm-database

  Java

  •0•2•0•0•Updated Nov 11, 2021Nov 11, 2021

• domain-analysis

  Public
  The goal of this repository is to collect and develop domain analysis content for the phenotypic domain.

  Apache License 2.0

  •0•2•16•0•Updated May 28, 2021May 28, 2021

• phenopacket-schema-fhir-interop

  Public
  Interoperability library for Phenopackets schema and FHIR® standard

  Java

  •

  MIT License

  •2•3•1•2•Updated Mar 31, 2021Mar 31, 2021

• operations

  Public
  Discussions on strategic planning & roadmaps for development.

  BSD 3-Clause "New" or "Revised" License

  •0•0•6•0•Updated Apr 27, 2020Apr 27, 2020

• phenopacket-schema-fhir-implementation-guide

  Public
  FHIR® implementation guide for the phenopacket-schema

  HTML

  •0•4•2•0•Updated Feb 17, 2020Feb 17, 2020

• phenopacket-format

  Public archive
  phenotypemonarchinitiativedisease

  Python

  •10•26•69•0•Updated Aug 7, 2019Aug 7, 2019

• phenopacket-python

  Public archive
  monarchinitiativephenopackets

  Python

  •3•8•3•0•Updated Sep 25, 2018Sep 25, 2018

• phenopackets-js

  Public archive
  JavaScript API for working with Phenopackets

  monarchinitiativephenopackets

  0•0•0•0•Updated Sep 25, 2018Sep 25, 2018

• pxftools

  Public archive
  A command line utility for operating over Phenotype eXchange Format (PXF) files.

  phenotypemonarchinitiativephenopackets+ 2pxfphenotype-exchange-format

  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•7•0•Updated Sep 25, 2018Sep 25, 2018

• phenopacket-reference-implementation

  Public archive
  Reference java implementation for phenopackets

  monarchinitiativephenopacketsyaml+ 4jsondiseasephenotypespxf

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •9•6•22•1•Updated Sep 25, 2018Sep 25, 2018

• patient-repo

  Public archive
  1•0•0•0•Updated Sep 18, 2018Sep 18, 2018