Repositories list

• UMLS-Types-assignor

  Public
  Machine Learning model that learns from Unified Medical Language System Metathesaurus (UMLS Metathesaurus) database tagging new graph in Semantic Network

  Jupyter Notebook

  •0•1•0•0•Updated Jul 28, 2022Jul 28, 2022

• bioportal_web_ui

  Public archive
  A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.

  Ruby

  •

  Other

  •29•4•0•0•Updated Nov 2, 2020Nov 2, 2020

• docker-compose-bioportal

  Public
  A Docker compose to have a fully working BioPortal development environment

  XSLT

  •7•1•0•0•Updated Jan 20, 2019Jan 20, 2019

• cladimed2skos

  Public
  SKOS version of CLADIMED

  Java

  •0•0•2•0•Updated Feb 14, 2018Feb 14, 2018

• biotex

  Public
  Biotex application (automatic extraction of biomedical terms)

  Java

  •5•4•0•0•Updated Dec 8, 2017Dec 8, 2017

• UnitexRecognizer

  Public
  Workflow to use Unitex with the SIFR Annotator

  C++

  •0•0•0•0•Updated Dec 1, 2017Dec 1, 2017

• paradise_extractor

  Public
  Shell

  •0•0•0•0•Updated Jul 27, 2017Jul 27, 2017

• sifr_project_java_ontology_processing

  Public
  Java Scripts to process Ontologies using OWLAPI for the SIFR project

  Java

  •0•0•3•0•Updated Jul 17, 2017Jul 17, 2017

• Heuristics

  Public
  Java

  •0•0•0•0•Updated Apr 6, 2017Apr 6, 2017

• umls2rdf

  Public
  These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

  Python

  •

  Other

  •37•1•0•0•Updated Apr 5, 2017Apr 5, 2017

• multilingual_mappings

  Public
  Web Ontology Language

  •2•0•3•0•Updated Feb 10, 2017Feb 10, 2017

• viewpoints_xps

  Public
  Misc experimentations of the Viewpoints project.

  0•0•0•0•Updated Dec 14, 2016Dec 14, 2016

• purl_servlet

  Public
  A simple servlet to resolve purl.lirmm.fr URIs

  Java

  •0•1•0•0•Updated Oct 4, 2016Oct 4, 2016

• bioportal_import_ontologies

  Public
  Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance

  Ruby

  •0•0•0•0•Updated Jul 3, 2015Jul 3, 2015

• lexicon_builder

  Public
  Dictionnary/lexicon creation from a BioPortal ontology repository

  Java

  •0•0•0•0•Updated Jun 1, 2015Jun 1, 2015

• semanticdistance_wa

  Public
  Project of Pierre and Olivier for semantic distance web application.

  PHP

  •

  MIT License

  •1•0•0•1•Updated Apr 6, 2015Apr 6, 2015

• viewpoints_kernel

  Public
  This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism

  Java

  •

  GNU General Public License v2.0

  •0•2•0•0•Updated Mar 11, 2015Mar 11, 2015

• biotex_wa

  Public
  Java (Servlet/JSP) interface of the BioTex application

  XML

  •2•0•0•0•Updated Feb 18, 2015Feb 18, 2015

• annotator_addons

  Public
  Soumia Melzi's project. Contains enhancement of the NCBO Annotator. Cf SWAT4LS 2014 papers

  Java

  •0•0•0•0•Updated Feb 18, 2015Feb 18, 2015

• viewpoints_wa

  Public
  Viewpoints Web Application

  XML

  •0•0•0•0•Updated Feb 16, 2015Feb 16, 2015

• viewpoints_io

  Public
  This is the ViewpointS import/export module. It index web data, it allow to exchange viewpoints data in xml format, it manage the persistence thanks to Neo4J.

  Java

  •

  GNU General Public License v2.0

  •0•1•0•0•Updated Feb 9, 2015Feb 9, 2015