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Conversion from OBO to OWL Functional creates invalid IRIs #286

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althonos opened this issue Jul 12, 2019 · 0 comments
Open

Conversion from OBO to OWL Functional creates invalid IRIs #286

althonos opened this issue Jul 12, 2019 · 0 comments

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@althonos
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althonos commented Jul 12, 2019

Hi!

When converting from OBO to OWL Functional, some prefixed identifiers are expanded without proper escaping, creating the invalid IRIs.

Example:

  • Download ecocore.obo
  • Run owltools ecocore.obo -o -f ofn ecocore.ofn

The resulting file will contain invalid IRIs such as:

http://www.geneontology.org/formats/oboInOwl#http://www.w3.org/2000/01/rdf-schema#seeAlso

(this is also an obvious roundtrip issue but as far as this goes I'm only concerned about the syntax right now).

Related issues:

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