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DESCRIPTION
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Package: SFEData
Title: Example SpatialFeatureExperiment datasets
Version: 1.8.1
Authors@R:
c(person("Lambda", "Moses", email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7092-9427")),
person("Alik", "Huseynov",
comment = c(ORCID = "0000-0002-1438-4389"),
role = "aut"),
person("Kayla", "Jackson", email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0000-0001-6483-0108")),
person("Lior", "Pachter", email = "[email protected]",
role = c("aut", "ths"),
comment = c(ORCID = "0000-0002-9164-6231")))
Description:
Example spatial transcriptomics datasets with Simple Feature annotations
as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq,
Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse
skeletal muscle, human melanoma metastasis, human lung, breast cancer, and
mouse liver.
Imports:
BiocFileCache,
AnnotationHub,
ExperimentHub,
utils
Suggests:
BiocStyle,
knitr,
rmarkdown,
SeuratObject,
SpatialFeatureExperiment,
testthat (>= 3.0.0)
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews:
ExperimentHub,
ExpressionData,
Mus_musculus_Data,
Homo_sapiens_Data,
SpatialData,
Tissue,
SingleCellData
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/pachterlab/SFEData
BugReports: https://github.com/pachterlab/SFEData/issues