From 0b6fbbd4534285131e84193a160fbb55c8a885a7 Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Mon, 23 Oct 2023 15:59:12 -0500 Subject: [PATCH] fix parameter parsing --- pggb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/pggb b/pggb index c3b7b68..1e8504d 100755 --- a/pggb +++ b/pggb @@ -629,7 +629,11 @@ if [[ $vcf_spec != false ]]; then for s in $( echo "$vcf_spec" | tr ',' ' ' ); do ref=$(echo "$s" | cut -f 1 -d: ) - pop_length=$(echo "$s" | cut -f 2 -d: ) + if [[ "$s" == *":"* ]]; then + pop_length=$(echo "$s" | cut -f 2 -d: ) + else + pop_length="" + fi if [[ -z $pop_length ]]; then pop_length=0 fi