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Transfrom score.json to temp/score.txt.
-----------100K-100K------------
./semi_interval.out "tasks/100K-100K/x.txt" "tasks/100K-100K/y.txt" "tasks/100K-100K/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/100K-100K/x.txt
- size: 98067
sequence Y: tasks/100K-100K/y.txt
- size: 99326
time taken: 4.07s
[OUTPUT]
best intervals: tasks/100K-100K/out/best.txt
best score: -26379.70000
inteval: X=[1, 98067] Y=[1, 99326]
- score: -26379.70000
---------------------------
./alignment.out "tasks/100K-100K/x.txt" "tasks/100K-100K/y.txt" temp/best.txt temp/score.txt "tasks/100K-100K/out/alm/-26379.70000-1-98067-1-99326.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -26379.7
- sequence X: tasks/100K-100K/x.txt
- - interval: [1, 98067]
- sequence Y: tasks/100K-100K/y.txt
- - interval: [1, 99326]
time taken: 20.42s
[OUTPUT]
best score: -26379.7
alignment: tasks/100K-100K/out/alm/-26379.70000-1-98067-1-99326.txt
- score: -26379.7
-----------100K-10K------------
./semi_interval.out "tasks/100K-10K/x.txt" "tasks/100K-10K/y.txt" "tasks/100K-10K/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/100K-10K/x.txt
- size: 98067
sequence Y: tasks/100K-10K/y.txt
- size: 10150
time taken: 1.87s
[OUTPUT]
best intervals: tasks/100K-10K/out/best.txt
best score: -149507.60000
inteval: X=[1, 98067] Y=[1, 10150]
- score: -149507.60000
---------------------------
./alignment.out "tasks/100K-10K/x.txt" "tasks/100K-10K/y.txt" temp/best.txt temp/score.txt "tasks/100K-10K/out/alm/-149507.60000-1-98067-1-10150.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -149508
- sequence X: tasks/100K-10K/x.txt
- - interval: [1, 98067]
- sequence Y: tasks/100K-10K/y.txt
- - interval: [1, 10150]
time taken: 7.22s
[OUTPUT]
best score: -149508
alignment: tasks/100K-10K/out/alm/-149507.60000-1-98067-1-10150.txt
- score: -149508
-----------small------------
./semi_interval.out "tasks/small/x.txt" "tasks/small/y.txt" "tasks/small/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/small/x.txt
- size: 20
sequence Y: tasks/small/y.txt
- size: 15
time taken: 0.00s
[OUTPUT]
best intervals: tasks/small/out/best.txt
best score: -14.00000
inteval: X=[1, 20] Y=[1, 15]
- score: -14.00000
---------------------------
./alignment.out "tasks/small/x.txt" "tasks/small/y.txt" temp/best.txt temp/score.txt "tasks/small/out/alm/-14.00000-1-20-1-15.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -14
- sequence X: tasks/small/x.txt
- - interval: [1, 20]
- sequence Y: tasks/small/y.txt
- - interval: [1, 15]
time taken: 1.20s
[OUTPUT]
best score: -14
alignment: tasks/small/out/alm/-14.00000-1-20-1-15.txt
- score: -14
-----------1K-1K------------
./semi_interval.out "tasks/1K-1K/x.txt" "tasks/1K-1K/y.txt" "tasks/1K-1K/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/1K-1K/x.txt
- size: 972
sequence Y: tasks/1K-1K/y.txt
- size: 979
time taken: 0.01s
[OUTPUT]
best intervals: tasks/1K-1K/out/best.txt
best score: -281.20000
inteval: X=[1, 972] Y=[1, 979]
- score: -281.20000
---------------------------
./alignment.out "tasks/1K-1K/x.txt" "tasks/1K-1K/y.txt" temp/best.txt temp/score.txt "tasks/1K-1K/out/alm/-281.20000-1-972-1-979.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -281.2
- sequence X: tasks/1K-1K/x.txt
- - interval: [1, 972]
- sequence Y: tasks/1K-1K/y.txt
- - interval: [1, 979]
time taken: 1.22s
[OUTPUT]
best score: -281.2
alignment: tasks/1K-1K/out/alm/-281.20000-1-972-1-979.txt
- score: -281.2
-----------10K-100K------------
./semi_interval.out "tasks/10K-100K/x.txt" "tasks/10K-100K/y.txt" "tasks/10K-100K/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/10K-100K/x.txt
- size: 9747
sequence Y: tasks/10K-100K/y.txt
- size: 99326
time taken: 0.68s
[OUTPUT]
best intervals: tasks/10K-100K/out/best.txt
best score: -152856.20000
inteval: X=[1, 9747] Y=[1, 99326]
- score: -152856.20000
---------------------------
./alignment.out "tasks/10K-100K/x.txt" "tasks/10K-100K/y.txt" temp/best.txt temp/score.txt "tasks/10K-100K/out/alm/-152856.20000-1-9747-1-99326.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -152856
- sequence X: tasks/10K-100K/x.txt
- - interval: [1, 9747]
- sequence Y: tasks/10K-100K/y.txt
- - interval: [1, 99326]
time taken: 3.85s
[OUTPUT]
best score: -152856
alignment: tasks/10K-100K/out/alm/-152856.20000-1-9747-1-99326.txt
- score: -152856
-----------10K-10K------------
./semi_interval.out "tasks/10K-10K/x.txt" "tasks/10K-10K/y.txt" "tasks/10K-10K/out/best.txt" temp/score.txt
semi-global-setting: src/headers/myconfig.h
- x: [fixed, fixed]
- y: [fixed, fixed]
score matrix: temp/score.txt
sequence X: tasks/10K-10K/x.txt
- size: 9747
sequence Y: tasks/10K-10K/y.txt
- size: 10150
time taken: 0.12s
[OUTPUT]
best intervals: tasks/10K-10K/out/best.txt
best score: -2705.20000
inteval: X=[1, 9747] Y=[1, 10150]
- score: -2705.20000
---------------------------
./alignment.out "tasks/10K-10K/x.txt" "tasks/10K-10K/y.txt" temp/best.txt temp/score.txt "tasks/10K-10K/out/alm/-2705.20000-1-9747-1-10150.txt"
score matrix: temp/score.txt
interval: temp/best.txt
- index: 0
- score: -2705.2
- sequence X: tasks/10K-10K/x.txt
- - interval: [1, 9747]
- sequence Y: tasks/10K-10K/y.txt
- - interval: [1, 10150]
time taken: 1.33s
[OUTPUT]
best score: -2705.2
alignment: tasks/10K-10K/out/alm/-2705.20000-1-9747-1-10150.txt
- score: -2705.2