From dd83ed6f140c1cb86c7fcf763da62fad1a6e96c9 Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Sun, 12 Jan 2025 19:57:26 +0100 Subject: [PATCH] Autoupdate tool blog post --- _posts/2025-01-12-tool-update.md | 61 ++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) create mode 100644 _posts/2025-01-12-tool-update.md diff --git a/_posts/2025-01-12-tool-update.md b/_posts/2025-01-12-tool-update.md new file mode 100644 index 00000000..1c2f68e9 --- /dev/null +++ b/_posts/2025-01-12-tool-update.md @@ -0,0 +1,61 @@ +--- +site: freiburg +tags: [tools] +title: UseGalaxy.eu Tool Updates for 2025-01-12 +supporters: +- denbi +- elixir +--- + +On 2025-01-12, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #495](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#495/) + + +## Mothur + +- mothur_corr_axes was updated to [0968daa9b52f](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_corr_axes/0968daa9b52f) +- mothur_corr_axes was updated to [0c76942a61e2](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_corr_axes/0c76942a61e2) +- mothur_sens_spec was updated to [27171cf0b8ba](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_sens_spec/27171cf0b8ba) +- mothur_sffinfo was updated to [09e3b0966a11](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_sffinfo/09e3b0966a11) + +## QIIME 2 + +- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) +- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) + +## Annotation + +- groot was updated to [4d5cf5a423d5](https://toolshed.g2.bx.psu.edu/view/iuc/groot/4d5cf5a423d5) + +## Assembly + +- fastk_fastk was updated to [34245579d255](https://toolshed.g2.bx.psu.edu/view/iuc/fastk_fastk/34245579d255) +- fastk_histex was updated to [b897c5daf0ce](https://toolshed.g2.bx.psu.edu/view/iuc/fastk_histex/b897c5daf0ce) +- fastk_logex was updated to [73ddd200456a](https://toolshed.g2.bx.psu.edu/view/iuc/fastk_logex/73ddd200456a) + +## Graph/Display Data + +- ggplot2_histogram was updated to [9d060114554c](https://toolshed.g2.bx.psu.edu/view/iuc/ggplot2_histogram/9d060114554c) + +## Metagenomic Analysis + +- phyloseq_add_rank_names was updated to [e51700388188](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_add_rank_names/e51700388188) +- phyloseq_from_biom was updated to [b8a4de1a4e19](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_biom/b8a4de1a4e19) +- phyloseq_from_biom was updated to [c0101c72b8af](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_biom/c0101c72b8af) +- phyloseq_from_dada2 was updated to [bda00cb136ee](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/bda00cb136ee) +- phyloseq_plot_bar was updated to [d0fa6a43c838](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_bar/d0fa6a43c838) +- phyloseq_plot_ordination was updated to [f9543efabd85](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/f9543efabd85) +- phyloseq_plot_richness was updated to [a20bc31f2821](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/a20bc31f2821) + +## Single-cell + +- anndata_export was updated to [83609ef746e9](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_export/83609ef746e9) +- anndata_import was updated to [13cf83ced60c](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_import/13cf83ced60c) +- anndata_inspect was updated to [33c0081e16c6](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_inspect/33c0081e16c6) +- anndata_manipulate was updated to [d1e49c3c0aa2](https://toolshed.g2.bx.psu.edu/view/iuc/anndata_manipulate/d1e49c3c0aa2) +- modify_loom was updated to [a7b951572609](https://toolshed.g2.bx.psu.edu/view/iuc/modify_loom/a7b951572609) +- scanpy_filter was updated to [5b3c1679d29b](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/5b3c1679d29b) + +## None + +- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) +