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CMakeLists.txt
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cmake_minimum_required (VERSION 3.1)
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake/Modules/")
include (CheckSymbolExists)
include (CheckCXXSymbolExists)
include (CheckIncludeFiles)
include (CheckIncludeFileCXX)
include (CheckCXXSourceCompiles)
include (GenerateExportHeader)
include (ProcessorCount)
include (GenerateVersion)
# Use ccache if available. Needs to be performed early for it to work with cmake.
find_program(CCACHE_PROGRAM ccache)
if(CCACHE_PROGRAM)
set_property(GLOBAL PROPERTY RULE_LAUNCH_COMPILE "${CCACHE_PROGRAM}")
endif()
project (oofem CXX C)
set (oofem_VERSION_MAJOR 2)
set (oofem_VERSION_MINOR 6)
set (oofem_VERSION_PATCH 0) # Unused
set (oofem_HOMEPAGE "http://www.oofem.org")
set (bp_HOMEPAGE "http://ksm.fsv.cvut.cz/%7Ebp/bp.html")
string(TIMESTAMP YEAR "%Y")
set (oofem_COPYRIGHT "Copyright (C) 1994-${YEAR} Borek Patzak")
set (oofem_EMAIL "[email protected]")
set(CMAKE_VERBOSE_MAKEFILE ON)
# Default is debug build
if (NOT CMAKE_BUILD_TYPE)
set (CMAKE_BUILD_TYPE Debug)
endif ()
function(add_git_submodule dir)
# add a Git submodule directory to CMake, assuming the
# Git submodule directory is a CMake project.
#
# Usage: in CMakeLists.txt
#
# include(AddGitSubmodule.cmake)
# add_git_submodule(mysubmod_dir)
find_package(Git REQUIRED)
if(NOT EXISTS ${dir}/CMakeLists.txt)
execute_process(COMMAND ${GIT_EXECUTABLE} submodule update --init --recursive -- ${dir}
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
#COMMAND_ERROR_IS_FATAL ANY #cmake 3.19
)
endif()
add_subdirectory(${dir})
endfunction(add_git_submodule)
if (MSVC)
add_definitions (-D_USE_MATH_DEFINES)
set (CMAKE_REQUIRED_DEFINITIONS "-D_USE_MATH_DEFINES")
# I'm not sure we should block these warnings or not:
# C4800 Conversion from int to bool performance warning (we should probably be using bool in most of these places though).
# C4127 Conditional expression is constant: Most of these uses are intentional (debugging code etc.)
# C4267 size_t to int conversion. Most of these are indices, but many places can be replaced by a for-each loop as well.
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -W4 -wd4786 -wd4100 -wd4996 -wd4706 -wd4512 -wd4251 -wd4800")
else ()
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -fPIC")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -fPIC")
endif ()
set (CMAKE_CXX_STANDARD 17)
set (CMAKE_CXX_FLAGS_DEBUG "-DDEBUG ${CMAKE_CXX_FLAGS_DEBUG}")
if (CMAKE_CXX_COMPILER_ID STREQUAL "Clang" OR CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
set (CMAKE_CXX_FLAGS_DEBUG "-O0 -Wsuggest-override ${CMAKE_CXX_FLAGS_DEBUG}")
endif()
set (CMAKE_CXX_FLAGS_PROFILING "${CMAKE_CXX_FLAGS_PROFILING} -O2 -pg")
#######################################################################
######################## Custom paths #################################
#######################################################################
set (SLEPC_DIR CACHE PATH "Manual SLEPc directory")
set (X11_DIR CACHE PATH "Manual X11 directory (OOFEG)")
set (TINYXML2_DIR CACHE PATH "Manual TinyXML-2 directory (CEMHYD only)")
#set (PETSC_DIR CACHE PATH "Manual PETSc directory")
set (PETSC_ARCH CACHE STRING "Manual PETSc arch name (e.g. linux-gnu-cxx-opt)")
set (MPI_DIR CACHE PATH "Manual MPI directory")
set (VTK_DIR CACHE PATH "Manual VTK directory (For binary VTU export)")
set (LAPACK_DIR CACHE PATH "Manual LAPACK directory")
set (SUPERLU_MT_DIR CACHE PATH "Manual SuperLU_MT directory")
set (SPOOLES_DIR CACHE PATH "Manual SPOOLES directory")
set (ELIXIR_DIR CACHE PATH "Manual Elixir directory (OOFEG only)")
set (CKIT_DIR CACHE PATH "Manual CKit directory (OOFEG only)")
set (METIS_DIR CACHE PATH "Manual Metis directory (Load balancing)")
set (PARMETIS_DIR CACHE PATH "Manual ParMetis directory (Load balancing)")
#intel mkl pardiso
set (INTEL_MKL_PARDISO_DIR CACHE PATH "Manual mkl pardiso directory (sparse direct solver)")
set (INTEL_ONEAPI_DIR CACHE PATH "Manual path to oneAPI install directory (sparse direct solver)")
#pardiso-project.org
set (PARDISO_ORG_DIR CACHE PATH "Manual pardiso-project.org directory (sparse direct solver)")
set (PARDISO_ORG_LIB CACHE PATH "Manual pardiso-project.org library's name with complete path (sparse direct solver)")
#set (BOOST_DIR CACHE PATH "Manual Boost directory")
set (PYBIND_DIR CACHE PATH "Manual pybind11 directory")
#######################################################################
######################## Options ######################################
#######################################################################
option (USE_OOFEG "Enable OOFEG" OFF)
option (USE_SHARED_LIB "Build shared library" ON)
option (USE_MFRONT "Build shared library" OFF)
option (BUILD_EXTRA_BENCHMARKS "Build benchmark target" OFF)
mark_as_advanced(BUILD_EXTRA_BENCHMARKS)
option (BUILD_EXTRA_EXAMPLES "Build examples (beam2d_1)" OFF)
mark_as_advanced(BUILD_EXTRA_EXAMPLES)
option (BUILD_EXTRA_HEXGRID "Build hexgrid" OFF)
mark_as_advanced(BUILD_EXTRA_HEXGRID)
option (BUILD_EXTRA_DREAM3D "Build dream3d" OFF)
mark_as_advanced(BUILD_EXTRA_DREAM3D)
# Parallel stuff
option (USE_MPI_PARALLEL "Enable MPI-based, distributed memory parallel support" OFF)
option (USE_METIS "Enable metis support" OFF)
option (USE_PARMETIS "Enable Parmetis support" OFF)
option (USE_OPENMP_PARALLEL "Enable OpenMP, shared memory parallelism" OFF)
# Solvers and such
option (USE_DSS "Enable DSS module" OFF) # No reason to use this
option (USE_IML "Enable iml++ solvers" OFF) # or this
option (USE_SPOOLES "Enable SPOOLES-solver" OFF) # or this
option (USE_INTEL_MKL_PARDISO "Enable MKLPARDISO solver support" OFF)
option (USE_ONEAPI "Enable OneMKL solver support via OneAPI" OFF)
option (USE_PARDISO_ORG "Enable PARDISO-project.org solver support" OFF)
option (USE_PETSC "Enable PETSc support (specify PETSC_DIR and/or PETSC_ARCH if needed)" OFF)
option (USE_SLEPC "Enable SLEPc support" OFF)
option (USE_LAPACK "Use LAPACK" OFF)
option (USE_SUPERLU_MT "Use SUPERLU_MT" OFF)
# Other external libraries
option (USE_TRIANGLE "Compile with Triangle bindings" OFF)
option (USE_VTK "Enable VTK (for exporting binary VTU-files)" OFF)
#option (USE_CGAL "CGAL" OFF)
# Internal modules
option (USE_SM "Enable structural mechanics module" ON)
option (USE_FM "Enable fluid mechanics module" ON)
option (USE_PFEM "Enable PFEM module" OFF)
option (USE_TM "Enable heat/mass transfer module" ON)
option (USE_CEMHYD "Enable CemHyd support" OFF)
option (USE_AM "Enable additive manufacturing module" OFF)
option (USE_T3D "Enable T3D support" OFF)
option (USE_BOOSTPYTHON_BINDINGS "Rather obsolete, use USE_PYBIND_BINDINGS. Enable Python bidings using boost (OOFEM callable from Python)." OFF)
option (USE_PYBIND_BINDINGS "Enable Python Pybind11 bindings (OOFEM callable from Python and vice versa)." OFF)
option (USE_PYTHON_EXTENSION "Enable Python extension for exposing C++ code to python. Uses Python.h library." OFF)
option (USE_HDF5 "HDF5 support" OFF)
option (USE_MPM "Enable experimental multiphysics module" OFF)
if (USE_MPI_PARALLEL)
add_definitions (-D__MPI_PARALLEL_MODE)
set (USE_MPI ON)
endif ()
# Enable coverage testing
if (CMAKE_COMPILER_IS_GNUCC)
option(ENABLE_COVERAGE "Enable coverage reporting for gcc/clang" FALSE)
if (ENABLE_COVERAGE)
add_compile_options(--coverage -O0)
list (APPEND EXT_LIBS --coverage)
endif()
endif ()
#######################################################################
######################## Internal libraries ###########################
#######################################################################
# I believe the subdirs should be used when including instead.
include_directories ("${oofem_SOURCE_DIR}/src")
include_directories ("${oofem_SOURCE_DIR}/src/oofemlib")
include_directories ("${oofem_SOURCE_DIR}/src/oofemlib/T3d/src")
include_directories ("${oofem_BINARY_DIR}")
# Is there really any reason not to compile all of them? Some has cross dependencies.
list (APPEND LIBS $<TARGET_OBJECTS:core>)
if (USE_FM)
include_directories ("${oofem_SOURCE_DIR}/src/fm")
add_definitions (-D__FM_MODULE)
list (APPEND LIBS $<TARGET_OBJECTS:fm>)
list (APPEND MODULE_LIST "fm")
if (USE_PFEM)
add_definitions (-D__PFEM_MODULE)
endif ()
endif ()
if (USE_TM)
include_directories ("${oofem_SOURCE_DIR}/src/tm")
add_definitions (-D__TM_MODULE)
list (APPEND LIBS $<TARGET_OBJECTS:tm>)
list (APPEND MODULE_LIST "tm")
if (USE_CEMHYD)
add_definitions (-D__CEMHYD_MODULE)
set (USE_TINYXML ON)
endif ()
endif ()
if (USE_AM)
include_directories ("${oofem_SOURCE_DIR}/src/am")
add_definitions (-D__AM_MODULE)
list (APPEND LIBS $<TARGET_OBJECTS:am>)
list (APPEND MODULE_LIST "am")
endif ()
if (USE_SM)
include_directories ("${oofem_SOURCE_DIR}/src/sm")
include_directories ("${oofem_SOURCE_DIR}/src/sm/Elements")
include_directories ("${oofem_SOURCE_DIR}/src/sm/Materials")
add_definitions (-D__SM_MODULE)
list (APPEND LIBS $<TARGET_OBJECTS:sm> $<TARGET_OBJECTS:sm_elements> $<TARGET_OBJECTS:sm_materials>)
list (APPEND MODULE_LIST "sm" "sm_elements" "sm_materials")
if (NOT MSVC AND NOT MINGW)
find_library (DL_LIB dl)
list (APPEND EXT_LIBS ${DL_LIB})
endif ()
# if (MINGW)
# find_library (DL_LIB ltdl HINTS "C:/MinGW/lib/" )
# list (APPEND EXT_LIBS ${DL_LIB})
# endif ()
endif ()
if (USE_DSS)
include_directories ("${oofem_SOURCE_DIR}/src/dss")
list (APPEND LIBS $<TARGET_OBJECTS:dss>)
list (APPEND MODULE_LIST "dss")
endif ()
if (USE_OPENMP_PARALLEL)
include (FindOpenMP)
if (OPENMP_FOUND)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
list (APPEND MODULE_LIST "openmp")
endif ()
endif ()
if (USE_MPM)
include_directories ("${oofem_SOURCE_DIR}/src/mpm")
add_definitions (-D__MPM_MODULE)
list (APPEND LIBS $<TARGET_OBJECTS:mpm>)
list (APPEND MODULE_LIST "mpm")
endif ()
if (USE_OOFEG)
add_definitions (-D__OOFEG)
# Necessary X11 stuff;
if (X11_DIR)
set (CMAKE_LIBRARY_DIR ${X11_DIR})
find_package (X11 REQUIRED PATHS ${X11_DIR})
find_library (XAW_LIB Xaw PATHS ${X11_DIR})
else ()
find_package (X11 REQUIRED)
find_library (XAW_LIB Xaw)
endif ()
# Krysls libraries:
find_library (ELIXIR_LIB elixir PATH "${ELIXIR_DIR}/src")
find_library (ESI_LIB esi PATH "${ELIXIR_DIR}/src")
if (${ELIXIR_LIB} STREQUAL "ELIXIR_LIB-NOTFOUND")
message (FATAL_ERROR "Elixir library not found (required for OOFEG)")
endif ()
find_library (CKIT_LIB ckit PATH "${CKIT_DIR}/src")
if (${CKIT_LIB} STREQUAL "CKIT_LIB-NOTFOUND")
message (FATAL_ERROR "Ckit library not found (required for OOFEG)")
endif ()
include_directories ("${ELIXIR_DIR}/include")
include_directories ("${CKIT_DIR}/include")
list (APPEND EXT_LIBS ${ESI_LIB} ${ELIXIR_LIB} ${CKIT_LIB} ${X11_LIBRARIES} ${X11_Xmu_LIB} ${X11_Xt_LIB} ${XAW_LIB})
list (APPEND MODULE_LIST "oofeg")
endif ()
#######################################################################
######################## External libraries ###########################
#######################################################################
#if (USE_BOOST)
# set (CMAKE_LIBRARY_DIR ${BOOST_DIR})
# find_package (BOOST REQUIRED)
# list (APPEND EXT_LIBS ${BOOST_LIBRARIES})
# if (BOOST_DIR)
# include_directories ("${BOOST_DIR}")
# list (APPEND MODULE_LIST "BOOST")
# endif ()
#
# add_definitions (-D__BOOST_MODULE)
#endif ()
if (USE_LAPACK)
set (CMAKE_LIBRARY_DIR ${LAPACK_DIR})
find_package (LAPACK REQUIRED)
list (APPEND EXT_LIBS ${LAPACK_LIBRARIES})
list (APPEND MODULE_LIST "LAPACK")
add_definitions (-D__LAPACK_MODULE)
endif ()
## There is a conflict on set.h as defined by libstdc and superlu_mt 3.1
## Therefore it is assumed that superlu include files
## are included using #include "SUPERLU_MT/include"
## The ${SUPERLU_MT_DIR} is added into compiler include path
## Therefore SUPERLU_MT/include has to be manually added pointing to
## ${SUPERLU_MT__DIR}/src directory
if (USE_SUPERLU_MT)
set (CMAKE_LIBRARY_DIR ${SUPERLU_MT_DIR})
#find_package (SuperLU REQUIRED)
find_package(BLAS REQUIRED)
find_library (SUPERLU_MT_LIB superlu_mt_OPENMP PATH "${SUPERLU_MT_DIR}/lib")
list (APPEND EXT_LIBS ${SUPERLU_MT_LIB} ${BLAS_LIBRARIES})
#set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${BLAS_LINKER_FLAGS}")
list (APPEND MODULE_LIST "SuperLU_MT")
include_directories("${SUPERLU_MT_DIR}")
set (CMAKE_REQUIRED_INCLUDES "${SUPERLU_MT_DIR}")
add_definitions (-D__SuperLU_MT_MODULE)
check_include_file_cxx ("${SUPERLU_MT_DIR}/include/slu_mt_ddefs.h" HAVE_SUPERLU_MT_DDEFS_H)
if (NOT HAVE_SUPERLU_MT_DDEFS_H)
message (FATAL_ERROR "Necessary SUPERLU_MT headers not found; refer to CMakeLists.txt for details")
endif ()
endif ()
if (USE_VTK)
set (CMAKE_LIBRARY_DIR ${VTK_DIR})
find_package (VTK REQUIRED NO_MODULE)
include (${VTK_USE_FILE}) # Sets necessary includes_directories
add_definitions (-D__VTK_MODULE)
list (APPEND EXT_LIBS ${VTK_LIBRARIES})
list (APPEND MODULE_LIST "VTK")
endif ()
if (USE_PARMETIS)
if (PARMETIS_DIR)
find_library (PARMETIS_LIB parmetis PATH "${PARMETIS_DIR}/lib")
include_directories ("${PARMETIS_DIR}/include")
else ()
find_library (PARMETIS_LIB parmetis)
endif ()
if (${PARMETIS_LIB} STREQUAL "PARMETIS_LIB-NOTFOUND")
message (FATAL_ERROR "Parmetis library not found")
endif ()
list (APPEND EXT_LIBS ${PARMETIS_LIB})
list (APPEND MODULE_LIST "parmetis")
set (USE_MPI ON)
set (USE_METIS ON)
endif ()
if (USE_METIS)
if (METIS_DIR)
find_library (METIS_LIB metis PATH "${METIS_DIR}/lib")
include_directories ("${METIS_DIR}/include")
else ()
find_library (METIS_LIB metis)
endif ()
if (${METIS_LIB} STREQUAL "METIS_LIB-NOTFOUND")
message (FATAL_ERROR "Metis library not found")
endif ()
list (APPEND EXT_LIBS ${METIS_LIB})
list (APPEND MODULE_LIST "metis")
endif ()
if (USE_PARDISO_ORG)
if (NOT PARDISO_ORG_LIB)
if (PARDISO_ORG_DIR)
find_library (PARDISO_ORG_LIB pardiso PATH "${PARDISO_ORG_DIR}")
else ()
find_library (PARDISO_ORG_LIB pardiso)
endif ()
endif ()
if (${PARDISO_ORG_LIB} STREQUAL "PARDISO_ORG_LIB-NOTFOUND")
message (FATAL_ERROR "Pardiso library not found")
endif ()
message(STATUS "PARDISO_ORG_LIB = ${PARDISO_ORG_LIB}")
list (APPEND EXT_LIBS ${PARDISO_ORG_LIB} blas lapack gfortran pthread)
set (CMAKE_CXX_COMPILE_FLAGS "${CMAKE_CXX_COMPILES_FLAGS} -fopenmp")
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fopenmp" )
list (APPEND MODULE_LIST "pardiso-project.org")
endif ()
if (USE_INTEL_MKL_PARDISO)
# Find the actual libraries:
list(APPEND MKL_LIBS "mkl_core" "mkl_gf_lp64" "mkl_gnu_thread" "pthread")
foreach (f ${MKL_LIBS})
if (INTEL_MKL_PARDISO_DIR)
find_library (${f}_LIB ${f} PATH "${INTEL_MKL_PARDISO_DIR}/mkl/lib/intel64/" DOC "MKLPARDISO (library)")
include_directories ("${INTEL_MKL_PARDISO_DIR}/mkl/include")
else ()
find_library (${f}_LIB ${f} HINTS "/opt/intel/composerxe/mkl/lib/intel64/" DOC "MKLPARDISO (library)")
include_directories ("/opt/intel/composerxe/mkl/include")
endif ()
if (${${f}_LIB} STREQUAL "${f}_LIB-NOTFOUND")
message (FATAL_ERROR "MKLPARDISO library not found")
endif ()
list (APPEND EXT_LIBS ${${f}_LIB})
endforeach ()
#list (APPEND EXT_LIBS ${MKLPARDISO_LIB})
list (APPEND MODULE_LIST "MKLPARDISO")
endif ()
if (USE_ONEAPI)
if (USE_INTEL_MKL_PARDISO)
message (FATAL_ERROR "Can't use both OneMKL and classic Intel MKL (disable USE_INTEL_MKL_PARDISO option)")
endif()
message(STATUS "Seeking OneAPI libraries...")
if (WIN32)
# Windows machine must use Intel OpenMP (libiomp5) for OneAPI
list(APPEND MKL_LIBS "mkl_core" "mkl_intel_lp64" "mkl_intel_thread" "libiomp5md")
else()
list(APPEND MKL_LIBS "mkl_core" "mkl_intel_lp64" "mkl_intel_thread" "pthread")
endif ()
foreach (f ${MKL_LIBS})
# OneAPI installation directory
if (INTEL_ONEAPI_DIR)
# user provided OneAPI directory
message(STATUS "User has provided OneAPI installation directory...")
set(oneapiDir ${INTEL_ONEAPI_DIR})
elseif (WIN32)
# Windows
set(oneapiDir "C:/Program Files (x86)/Intel/oneAPI")
else()
# MacOS or Linux
set(oneapiDir "/opt/intel/oneapi")
endif()
# library directory
# an alternative could be obtaining from OneAPI's Environment variables
if (WIN32)
# Windows
set(oneapiMklDir "${oneapiDir}/mkl/latest")
set(oneapiMklLibDir "${oneapiMklDir}/lib/intel64")
set(oneapiLibDir
"${oneapiDir}/compiler/latest/windows/compiler/lib/intel64")
elseif(APPLE)
# MacOS
set(oneapiMklDir "${oneapiDir}/mkl/latest")
set(oneapiMklLibDir "${oneapiMklDir}/lib")
set(oneapiLibDir "")
elseif(UNIX)
# Linux (not tested)
set(oneapiMklDir "${oneapiDir}/mkl/latest")
set(oneapiMklLibDir "${oneapiMklDir}/lib/intel64_lin")
set(oneapiLibDir "")
endif()
message(STATUS " Seeking for ${f} in: ${oneapiMklLibDir};${oneapiLibDir}...")
find_library (${f}_LIB ${f} HINTS "${oneapiMklLibDir}" "${oneapiLibDir}" DOC "MKLPARDISO (library)")
include_directories ("${oneapiMklDir}/include")
if (${${f}_LIB} STREQUAL "${f}_LIB-NOTFOUND")
message (FATAL_ERROR "OneAPI ${f} library not found")
else()
message (STATUS " OK: ${f} library successfully found at ${${f}_LIB}")
endif ()
list (APPEND EXT_LIBS ${${f}_LIB})
endforeach ()
list (APPEND MODULE_LIST "MKLPARDISO")
endif ()
if (USE_SLEPC)
set (USE_PETSC ON)
endif ()
if (USE_PETSC)
if (NOT "${PETSC_DIR}")
# setting defaults for typical linux environments:
#file (GLOB paths "/usr/lib/petscdir/*.*.*")
#list (GET paths 0 PETSC_DIR)
#message ("***************** PETSC_DIR: ${PETSC_DIR}")
endif ()
if (NOT "${PETSC_ARCH}")
#file (GLOB children RELATIVE ${PETSC_DIR} "${PETSC_DIR}/*")
#list (GET children 0 PETSC_ARCH)
#message ("***************** PETSC_ARCH: ${PETSC_ARCH}")
endif ()
find_package (PETSc)
# find_package(PETSc COMPONENTS CXX)
include_directories (${PETSC_INCLUDES})
list (APPEND EXT_LIBS ${PETSC_LIBRARIES})
list (APPEND MODULE_LIST "PETSc")
set (USE_MPI ON)
add_definitions (-D__PETSC_MODULE)
endif ()
if (USE_SLEPC)
if (SLEPC_DIR)
find_library (SLEPC_LIBS slepc PATH "${SLEPC_DIR}/${PETSC_ARCH}/lib")
include_directories ("${SLEPC_DIR}/include")
include_directories ("${SLEPC_DIR}/${PETSC_ARCH}/include")
else ()
find_library (SLEPC_LIBS slepc)
endif ()
if (${SLEPC_LIBS} STREQUAL "SLEPC_LIBS-NOTFOUND")
message (FATAL_ERROR "SLEPc library not found")
endif ()
list (APPEND EXT_LIBS ${SLEPC_LIBS})
list (APPEND MODULE_LIST "slepc")
set (USE_PETSC ON)
add_definitions (-D__SLEPC_MODULE)
endif ()
if (USE_MPI)
if (MPI_DIR)
include_directories ("${MPI_DIR}/include")
find_library (MPI_LIBRARY NAMES mpi PATHS ${MPI_DIR}/lib64 ${MPI_DIR}/lib)
find_library (MPI_CXX_LIBRARY NAMES mpi_cxx PATHS ${MPI_DIR}/lib64 ${MPI_DIR}/lib)
list (APPEND EXT_LIBS ${MPI_LIBRARY})
if (MPI_CXX_LIBRARY)
list (APPEND EXT_LIBS ${MPI_CXX_LIBRARY})
endif ()
else ()
include (FindMPI)
find_package (MPI REQUIRED)
set (CMAKE_CXX_COMPILE_FLAGS ${CMAKE_CXX_COMPILES_FLAGS} ${MPI_COMPILE_FLAGS})
set (CMAKE_CXX_LINK_FLAGS ${CMAKE_CXX_LINK_FLAGS} ${MPI_LINK_FLAGS})
add_definitions (-DMPICH_IGNORE_CXX_SEEK)
include_directories (${MPI_INCLUDE_PATH})
list (APPEND EXT_LIBS ${MPI_LIBRARIES})
endif (MPI_DIR)
list (APPEND MODULE_LIST "MPI")
# Compile and link flags?
endif ()
if (USE_T3D)
add_definitions (-D__T3D)
include_directories ("${oofem_SOURCE_DIR}/src/oofemlib/T3d/src")
check_include_file_cxx ("${oofem_SOURCE_DIR}/src/oofemlib/T3d/src/t3d.h" HAVE_T3D_H)
if ((NOT HAVE_T3D_H))
message (FATAL_ERROR "Necessary T3D headers not found")
endif ()
set (MODULE_LIST ${MODULE_LIST} "T3D")
add_definitions(-DT3D_OOFEM)
endif ()
if (USE_TRIANGLE)
find_library (TRIANGLE_LIB triangle DOC "Triangle (library)")
if (${TRIANGLE_LIB} STREQUAL "TRIANGLE_LIB-NOTFOUND")
message (FATAL_ERROR "Triangle library not found")
endif ()
add_definitions (-D__TRIANGLE_MODULE)
list (APPEND EXT_LIBS ${TRIANGLE_LIB})
list (APPEND MODULE_LIST "Triangle")
endif ()
if (USE_HDF5)
find_package(HDF5 REQUIRED COMPONENTS CXX HL)
include_directories(${HDF5_INCLUDE_DIRS})
list (APPEND EXT_LIBS ${HDF5_LIBRARIES})
add_definitions (-D__HDF_MODULE)
find_package(ZLIB)
list (APPEND EXT_LIBS ${ZLIB_LIBRARIES})
endif ()
if (USE_TINYXML)
if (TINYXML2_DIR)
include_directories (${TINYXML2_DIR})
find_library (TINYXML2_LIB NAMES tinyxml2 HINTS ${TINYXML2_DIR} NO_DEFAULT_PATH)
else ()
find_library (TINYXML2_LIB NAMES tinyxml2 )
endif ()
if (${TINYXML2_LIB} STREQUAL "TINYXML2_LIB-NOTFOUND")
message (FATAL_ERROR "TinyXML2 library not found")
endif ()
list (APPEND EXT_LIBS ${TINYXML2_LIB})
list (APPEND MODULE_LIST "TinyXML-2")
endif ()
if (USE_IML)
include_directories ("${oofem_SOURCE_DIR}")
set (CMAKE_REQUIRED_INCLUDES "${oofem_SOURCE_DIR}")
check_include_file_cxx ("iml/cg.h" HAVE_IML_CG_H)
check_include_file_cxx ("iml/gmres.h" HAVE_IML_GMRES_H)
if ((NOT HAVE_IML_CG_H) OR (NOT HAVE_IML_GMRES_H))
message (FATAL_ERROR "Necessary IML++ headers not found")
endif ()
list (APPEND MODULE_LIST "IML++")
endif ()
if (USE_SPOOLES)
if (SPOOLES_DIR)
find_library (SPOOLES_LIB spooles DOC "SPOOLES library" PATH "${SPOOLES_DIR}/lib")
include_directories ("${SPOOLES_DIR}/include")
else ()
find_library (SPOOLES_LIB spooles DOC "SPOOLES library")
endif ()
if (${SPOOLES_LIB} STREQUAL "SPOOLES_LIB-NOTFOUND")
message (FATAL_ERROR "SPOOLES not found")
endif ()
list (APPEND EXT_LIBS ${SPOOLES_LIB})
list (APPEND MODULE_LIST "SPOOLES")
endif ()
if (USE_PYTHON_EXTENSION OR USE_BOOSTPYTHON_BINDINGS)
# PythonLibs in cmake is bugged, have to try and rely on PythonInterp to get the suitable major and minor versions.
#set (CMAKE_LIBRARY_DIR ${PYTHON_DIR})
#Print if set up manually
message(STATUS "PYTHON_LIBRARY = ${Python3_LIBRARIES}")
message(STATUS "PYTHON_EXECUTABLE = ${Python3_EXECUTABLE}")
message(STATUS "PYTHON_INCLUDE_DIR = ${Python3_INCLUDE_DIRS}")
find_package (Python3 COMPONENTS Interpreter Development)
# find_package(PythonInterp "3" REQUIRED)
# find_package(PythonLibs "${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}" REQUIRED)
include_directories (${Python3_INCLUDE_DIRS})
list (APPEND EXT_LIBS ${Python3_LIBRARIES})
list (APPEND MODULE_LIST "Python")
if(USE_PYTHON_EXTENSION)
add_definitions(-D_PYTHON_EXTENSION)
endif ()
if(USE_BOOSTPYTHON_BINDINGS)
# require boost_python also for python stuff by itself
find_package(Boost COMPONENTS "python-py${Python3_VERSION_MAJOR}${Python3_VERSION_MINOR}" REQUIRED)
include_directories (${Boost_INCLUDE_DIRS})
list (APPEND EXT_LIBS ${Boost_LIBRARIES})
add_definitions(-D_BOOSTPYTHON_BINDINGS)
endif ()
endif ()
if(WIN32)
set(PYTHON_MODULE_EXTENSION ".pyd")
else()
set(PYTHON_MODULE_EXTENSION ".so")
endif()
if (USE_PYBIND_BINDINGS)
#build pybind11 bindings
find_package(Python COMPONENTS Interpreter Development)
#find_package(pybind11 CONFIG)
add_git_submodule(extern/pybind11)
if (PYBIND_DIR)
message(STATUS "PYBIND_DIR = ${PYBIND_DIR}")
include_directories (${PYBIND_DIR})#Need also to manually set it up since it can be anywhere
endif ()
include_directories (${pybind11_INCLUDE_DIR} ${Python_INCLUDE_DIRS})
list (APPEND EXT_LIBS ${Python_LIBRARIES})
pybind11_add_module(oofempy THIN_LTO ${oofem_SOURCE_DIR}/bindings/python/oofem.cpp ${PYBIND11_HEADERS})
target_link_libraries(oofempy PRIVATE liboofem)
set_target_properties (oofempy PROPERTIES SUFFIX "${PYTHON_MODULE_EXTENSION}")
# Make sure pytest is found or produce a fatal error
if(NOT PYTEST_FOUND)
execute_process(COMMAND ${Python_EXECUTABLE} -c "import pytest; print(pytest.__version__)"
RESULT_VARIABLE pytest_not_found OUTPUT_VARIABLE pytest_version ERROR_QUIET)
if(pytest_not_found)
message(FATAL_ERROR "Running the tests requires pytest. Please install it manually"
" (try: ${Python_EXECUTABLE} -m pip install pytest)")
endif()
set(PYBIND11_PYTEST_FOUND TRUE CACHE INTERNAL "")
add_definitions(-D_PYBIND_BINDINGS)
endif()
set (USE_SHARED_LIB ON)
endif()
#######################################################################
######################## Configuration ################################
#######################################################################
site_name (HOST_NAME)
set (HOST_TYPE "${CMAKE_SYSTEM_PROCESSOR}-${CMAKE_SYSTEM_NAME}") # This should be renamed TARGET_TYPE.
set (BUILDNAME "OOFEM(${MODULE_LIST})-${HOST_TYPE}-${HOST_NAME}")
check_include_file_cxx ("execinfo.h" HAVE_EXECINFO_H)
check_cxx_symbol_exists ("cbrt" "cmath" HAVE_CBRT)
check_cxx_symbol_exists ("isnan" "cmath" HAVE_ISNAN)
if (USE_SHARED_LIB)
set (OOFEM_EXPORT_HEADER "#include \"oofem_export.h\"")
# For consistant library on linux and windows platforms.
#add_compiler_export_flags (LIBOOFEM_EXPORT_CFLAGS)
else ()
set (OOFEM_EXPORT_HEADER "#define OOFEM_EXPORT\n#define OOFEM_NO_EXPORT")
endif ()
configure_file (
"${oofem_SOURCE_DIR}/src/oofemcfg.h.in"
"${oofem_BINARY_DIR}/oofemcfg.h"
)
configure_file (
"${oofem_SOURCE_DIR}/src/oofemenv.h.in"
"${oofem_BINARY_DIR}/oofemenv.h"
)
#######################################################################
######################## Targets ######################################
#######################################################################
# Subtargets
set (LIB_TYPE OBJECT)
add_subdirectory ("${oofem_SOURCE_DIR}/src/oofemlib")
if (USE_DSS)
add_subdirectory ("${oofem_SOURCE_DIR}/src/dss")
endif ()
if (USE_SM)
add_subdirectory ("${oofem_SOURCE_DIR}/src/sm")
add_subdirectory ("${oofem_SOURCE_DIR}/src/sm/Elements")
add_subdirectory ("${oofem_SOURCE_DIR}/src/sm/Materials")
endif ()
if (USE_TM)
add_subdirectory ("${oofem_SOURCE_DIR}/src/tm")
endif ()
if (USE_AM)
add_subdirectory ("${oofem_SOURCE_DIR}/src/am")
endif ()
if (USE_FM)
add_subdirectory ("${oofem_SOURCE_DIR}/src/fm")
endif ()
if (USE_MPM)
add_subdirectory ("${oofem_SOURCE_DIR}/src/mpm")
endif ()
set (oofempy)
if (USE_BOOSTPYTHON_BINDINGS)
set (oofempy ${oofem_SOURCE_DIR}/bindings/Deprecated/python/oofemlib.cpp)
endif ()
# Main targets
if (USE_SHARED_LIB)
add_library (liboofem
SHARED
${oofempy}
${LIBS}
)
target_link_libraries (liboofem ${EXT_LIBS})
set_target_properties (liboofem PROPERTIES OUTPUT_NAME oofem)
add_dependencies(liboofem version)
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (liboofem PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
install (TARGETS liboofem DESTINATION lib)
# This should be set automatically, but I think TARGET:objs confuses cmake:
set_target_properties (core PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (USE_FM)
set_target_properties (fm PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (fm PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
endif()
if (USE_SM)
set_target_properties (sm PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
set_target_properties (sm_elements PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
set_target_properties (sm_materials PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (sm PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
set_target_properties (sm_elements PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
set_target_properties (sm_materials PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
endif()
if (USE_TM)
set_target_properties (tm PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (tm PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
endif()
if (USE_AM)
set_target_properties (am PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (am PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
endif()
if (USE_MPM)
set_target_properties (mpm PROPERTIES COMPILE_DEFINITIONS "liboofem_EXPORTS")
if (NOT "${LIBOOFEM_EXPORT_CFLAGS}" STREQUAL "")
set_target_properties (mpm PROPERTIES COMPILE_FLAGS ${LIBOOFEM_EXPORT_CFLAGS})
endif ()
endif()
generate_export_header (liboofem
BASE_NAME OOFEM
)
endif ()
# OOFEM target
if (USE_SHARED_LIB) # Prefer dynamic lib if available.
add_executable (oofem ${oofem_SOURCE_DIR}/src/main/main.C)
add_dependencies(oofem version)
target_link_libraries (oofem liboofem)
else ()
add_executable (oofem ${oofem_SOURCE_DIR}/src/main/main.C ${LIBS})
add_dependencies(oofem version)
target_link_libraries (oofem ${EXT_LIBS})
endif ()
install (TARGETS oofem DESTINATION bin)
if (USE_MFRONT)
find_package (MFrontGenericInterface REQUIRED)
target_link_libraries(oofem mgis::MFrontGenericInterface)
endif ()
if (USE_OOFEG)
# OOFEG target:
if (USE_SHARED_LIB)
add_executable (oofeg ${oofem_SOURCE_DIR}/src/main/oofeg.C)
target_link_libraries (oofeg liboofem)
else ()
add_executable (oofeg ${oofem_SOURCE_DIR}/src/main/oofeg.C ${LIBS})
target_link_libraries (oofeg ${EXT_LIBS})
endif ()
install(TARGETS oofeg DESTINATION bin)
add_dependencies(oofeg version)
endif ()
if (BUILD_EXTRA_BENCHMARKS)
find_package(benchmark REQUIRED)
add_executable(liboofem_benchmark ${oofem_SOURCE_DIR}/src/main/benchmark.C)
add_dependencies(liboofem_benchmark version)
set_target_properties(liboofem_benchmark PROPERTIES EXCLUDE_FROM_ALL TRUE)
target_link_libraries (liboofem_benchmark liboofem benchmark)
endif ()
if (BUILD_EXTRA_EXAMPLES)
# Example of using liboofem with dynamic input record:
add_executable(beam2d_1 ${oofem_SOURCE_DIR}/bindings/oofemlib/beam2d_1.C)
add_dependencies(beam2d_1 version)
set_target_properties(beam2d_1 PROPERTIES EXCLUDE_FROM_ALL TRUE)
target_link_libraries (beam2d_1 liboofem)
endif ()
if (BUILD_EXTRA_HEXGRID)
add_executable(hexgrid ${oofem_SOURCE_DIR}/bindings/oofemlib/hexgrid.C)
set_target_properties(hexgrid PROPERTIES EXCLUDE_FROM_ALL TRUE)
target_link_libraries (hexgrid liboofem)
endif ()
if (BUILD_EXTRA_DREAM3D)
add_executable(dream3d_analysis ${oofem_SOURCE_DIR}/bindings/oofemlib/dream3d_analysis.C)
set_target_properties(dream3d_analysis PROPERTIES EXCLUDE_FROM_ALL TRUE)
target_link_libraries(dream3d_analysis liboofem)
endif ()
# CppCheck target (not built by default)
add_custom_target(cppcheck)
set_target_properties(cppcheck PROPERTIES EXCLUDE_FROM_ALL TRUE)
add_custom_command(TARGET cppcheck
COMMAND cppcheck "--xml" "--template=gcc" "--enable=all"
"-I${oofem_BINARY_DIR}/"
"-I${oofem_SOURCE_DIR}/src/oofemlib/"
"-I${oofem_SOURCE_DIR}/src/sm/"
"-I${oofem_SOURCE_DIR}/src/fm/"
"-I${oofem_SOURCE_DIR}/src/tm/"
"-DDEBUG"
${oofem_SOURCE_DIR}/src/oofemlib/
${oofem_SOURCE_DIR}/src/sm/
${oofem_SOURCE_DIR}/src/fm/
${oofem_SOURCE_DIR}/src/tm/
${oofem_SOURCE_DIR}/src/main/
"2>"
"cppcheck.xml"
COMMENT "Running cppcheck on entire source"
)
#######################################################################
######################## Documentation ################################
#######################################################################
find_package (Doxygen)
if (DOXYGEN_FOUND)
set (DOXYGEN_INPUT ${oofem_BINARY_DIR}/doxygen.cfg)
set (DOXYGEN_OUTPUT ${oofem_BINARY_DIR}/doc/api/)
file (MAKE_DIRECTORY ${DOXYGEN_OUTPUT})
configure_file (
"${oofem_SOURCE_DIR}/doc/refman/footer.html.in"
"${oofem_BINARY_DIR}/footer.html")
configure_file (
"${oofem_SOURCE_DIR}/doc/refman/doxygen.cfg.in"
"${oofem_BINARY_DIR}/doxygen.cfg")
add_custom_target (
apidoc
COMMAND ${CMAKE_COMMAND} -E echo_append "Building API Documentation..."
COMMAND ${DOXYGEN_EXECUTABLE} ${DOXYGEN_INPUT}
COMMAND ${CMAKE_COMMAND} -E echo "Done."
WORKING_DIRECTORY ${oofem_BINARY_DIR}
DEPENDS)
endif (DOXYGEN_FOUND)
configure_file (
"${oofem_SOURCE_DIR}/doc/include.tex.in"
"${oofem_BINARY_DIR}")
# TODO: Manuals not done yet
add_custom_target (
elementlibmanual
COMMAND pdflatex elementlibmanual --output=${oofem_BINARY_DIR}/doc/
COMMAND pdflatex elementlibmanual --output=${oofem_BINARY_DIR}/doc/
#COMMAND tex4ht elementlibmanual --output=${oofem_BINARY_DIR}/doc/
WORKING_DIRECTORY ${oofem_SOURCE_DIR}/doc/elementlibmanual/
)
#######################################################################
######################## Tests ########################################
#######################################################################
set (oofem_TEST_DIR "${oofem_SOURCE_DIR}/tests/")
set (oofem_cmd $<TARGET_FILE:oofem>)
file(TO_CMAKE_PATH "${oofem_TEST_DIR}/valgrind.supp" MEMORYCHECK_SUPPRESSIONS_FILE)
include (CTest)
#set (CTEST_MEMORYCHECK_SUPPRESSIONS_FILE ${oofem_TEST_DIR}/tests/valgrind.supp)
if (USE_MPI_PARALLEL)
set (par_dir ${oofem_TEST_DIR}/partests)
file (GLOB parallel_tests RELATIVE "${par_dir}" "${par_dir}/*/")
foreach (case ${parallel_tests})
file (GLOB files "${par_dir}/${case}/${case}.oofem.in.*")
list (LENGTH files num_files)
add_test (NAME "partest_${case}" WORKING_DIRECTORY ${par_dir}/${case} COMMAND "mpirun" "--oversubscribe" "-np" ${num_files} ${oofem_cmd} "-p" "-f" ${case}.oofem.in "-ksp_type" "cg")
endforeach (case)
# partest_brazil_2d_nl7 requires more time on testing server than default 1500
set_tests_properties(partest_brazil_2d_nl7 PROPERTIES TIMEOUT 2500)
endif ()
# Sequential test cases
if (USE_SM)
file (GLOB sm_tests RELATIVE "${oofem_TEST_DIR}/sm" "${oofem_TEST_DIR}/sm/*.in")
foreach (case ${sm_tests})
add_test (NAME "test_sm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/sm COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
file (GLOB sm_tests RELATIVE "${oofem_TEST_DIR}/sm" "${oofem_TEST_DIR}/sm/*.sh")
foreach (case ${sm_tests})
add_test (NAME "test_sm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/sm COMMAND bash ${case} ${oofem_cmd})
endforeach (case)
endif ()
if (USE_FM)
file (GLOB fm_tests RELATIVE "${oofem_TEST_DIR}/fm" "${oofem_TEST_DIR}/fm/*.in")
foreach (case ${fm_tests})
add_test (NAME "test_fm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/fm COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_TM)
file (GLOB tm_tests RELATIVE "${oofem_TEST_DIR}/tm" "${oofem_TEST_DIR}/tm/*.in")
foreach (case ${tm_tests})
add_test (NAME "test_tm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/tm COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_AM)
file (GLOB tm_tests RELATIVE "${oofem_TEST_DIR}/am" "${oofem_TEST_DIR}/am/*.in")
foreach (case ${tm_tests})
add_test (NAME "test_am_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/am COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_TM AND USE_SM)
file (GLOB tmsm_tests RELATIVE "${oofem_TEST_DIR}/tmsm" "${oofem_TEST_DIR}/tmsm/*.in")
foreach (case ${tmsm_tests})
add_test (NAME "test_tmsm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/tmsm COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_TM AND USE_FM)
file (GLOB tmfm_tests RELATIVE "${oofem_TEST_DIR}/tmfm" "${oofem_TEST_DIR}/tmfm/*.in")
foreach (case ${tmfm_tests})
add_test (NAME "test_tmfm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/tmfm COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_TM AND USE_CEMHYD)
file (GLOB tmcemhyd_tests RELATIVE "${oofem_TEST_DIR}/tmcemhyd" "${oofem_TEST_DIR}/tmcemhyd/*.in")
foreach (case ${tmcemhyd_tests})
add_test (NAME "test_tm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/tmcemhyd COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_FM AND USE_PFEM)
file (GLOB fmpfem_tests RELATIVE "${oofem_TEST_DIR}/fmpfem" "${oofem_TEST_DIR}/fmpfem/*.in")
foreach (case ${fmpfem_tests})
add_test (NAME "test_fm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/fmpfem COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_SM AND USE_MFRONT)
file (GLOB smmfront_tests RELATIVE "${oofem_TEST_DIR}/smmfront" "${oofem_TEST_DIR}/smmfront/*.in")
foreach (case ${smmfront_tests})
add_test (NAME "test_sm_${case}" WORKING_DIRECTORY ${oofem_TEST_DIR}/smmfront COMMAND ${oofem_cmd} "-f" ${case})
endforeach (case)
endif()
if (USE_MPM)